View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_58 (Length: 331)
Name: NF2729_low_58
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 317
Target Start/End: Complemental strand, 39190691 - 39190391
Alignment:
| Q |
17 |
aggagagaaggcattcattcattctaccaacaaaaaa-tagggcgataggtactctcatctctatcttcctttcttcttccgccgccacttacctacact |
115 |
Q |
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| T |
39190691 |
aggagagaaggcattcattcattctaccaacaaaaaaatagggcgataggtactctcatctctatcttcctttcttcttccgccgccacttacctacact |
39190592 |
T |
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| Q |
116 |
cattttctcatgtacttattttgtacacaaaagaaatatcacgtgttatttgatatatatgcatgtattttatgttttgttttgtcatgcatttgtgtct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39190591 |
cattttctcatgtacttattttgtacacaaaagaaatatcacgtgttatttgatatatatgcatgtattttatgttttgttttgtcatgcatttgtgtct |
39190492 |
T |
|
| Q |
216 |
atgtaattctcatttcattatcatctttttctctttccaattgaaaatgtttttggaattgaaaaattcaagttttgaggatatatgtagatgatgatct |
315 |
Q |
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| T |
39190491 |
atgtaattctcatttcattatcatcttattcgctttccaatagaaaatg-ttttggaattgaaaaattcaagttttgaggatatatgtagatgatgatct |
39190393 |
T |
|
| Q |
316 |
tg |
317 |
Q |
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|| |
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| T |
39190392 |
tg |
39190391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 217 - 310
Target Start/End: Original strand, 41259713 - 41259805
Alignment:
| Q |
217 |
tgtaattctcatttcattatcatctttttctctttccaattgaaaatgtttttggaattgaaaaattcaagttttgaggatatatgtagatgat |
310 |
Q |
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||||||| |||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||||||||||| || ||| ||||||||| |
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| T |
41259713 |
tgtaattttcatttcattatcatcttattctctttccaatcaaaaaatgttttggaattggaaaattcaagttttgaagacata-gtagatgat |
41259805 |
T |
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