View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_60 (Length: 328)
Name: NF2729_low_60
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 40426814 - 40426517
Alignment:
| Q |
17 |
gaagggaaaagcttagccagagattcattgctctttcatctcttcttcctggactcaaaaaggtactatatatattctaatgaatctcatgcacataaat |
116 |
Q |
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| T |
40426814 |
gaagggaaaagcttagccagagattcatttctctttcatctcttcttcctggactcaaaaaggtactatatatattctaatgaatctcatgcacataaat |
40426715 |
T |
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| Q |
117 |
atgcatggttgcgttgcatttgtctgaaaccgcaattgaaaaccatg--atatcctctatcaagtatatacaaatattatttaacattaatcaatgttta |
214 |
Q |
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| T |
40426714 |
atgcatggttgcgttgcatttgtctgaaaccgcaattgaaaaccatgatatatcctctatcaagtatatacaaatattatttaacattaatcaatgttta |
40426615 |
T |
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| Q |
215 |
ctttgcatgcagatggacaaggcaactattttggaagatgctataaaacatcttaagcaactaaatgaaagagtgaagactttggaggaacatgtagc |
312 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40426614 |
ctttgcatccagatggacaaggcaactattttggaagatgctataaaacatcttaagcaactaaacgaaagagtgaagactttggaggaacatgtagc |
40426517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 200 - 312
Target Start/End: Complemental strand, 40441694 - 40441582
Alignment:
| Q |
200 |
attaatcaatgtttactttgcatgcagatggacaaggcaactattttggaagatgctataaaacatcttaagcaactaaatgaaagagtgaagactttgg |
299 |
Q |
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| T |
40441694 |
attaaccaaagttcactttgcatgcagatggacaaggcaactattttagaagatgctataaaacatatgaagcaactacaggaaagagtaaagactttag |
40441595 |
T |
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| Q |
300 |
aggaacatgtagc |
312 |
Q |
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| T |
40441594 |
aggaacaagtagc |
40441582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 40441902 - 40441828
Alignment:
| Q |
17 |
gaagggaaaagcttagccagagattcattgctctttcatctcttcttcctggactcaaaaaggtactatatatat |
91 |
Q |
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||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
40441902 |
gaagggaaaagcttagccagagattcattgcactttcctctattcttcctggactcaaaaaggtactatatatat |
40441828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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