View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_low_65 (Length: 308)

Name: NF2729_low_65
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_low_65
NF2729_low_65
[»] chr6 (6 HSPs)
chr6 (171-298)||(5684830-5684957)
chr6 (8-175)||(5693732-5693890)
chr6 (85-175)||(17095983-17096073)
chr6 (75-175)||(27753070-27753170)
chr6 (106-175)||(29465258-29465327)
chr6 (85-150)||(6812094-6812159)
[»] chr2 (5 HSPs)
chr2 (8-175)||(39446285-39446450)
chr2 (8-135)||(11916183-11916310)
chr2 (71-142)||(12184760-12184830)
chr2 (110-168)||(25749847-25749905)
chr2 (75-175)||(21848188-21848288)
[»] chr3 (10 HSPs)
chr3 (22-150)||(30732955-30733083)
chr3 (77-175)||(25701516-25701614)
chr3 (13-175)||(38585906-38586068)
chr3 (71-168)||(19611174-19611271)
chr3 (70-168)||(13778206-13778304)
chr3 (89-175)||(1294572-1294658)
chr3 (71-173)||(55222426-55222528)
chr3 (109-168)||(40243108-40243167)
chr3 (106-140)||(48098405-48098439)
chr3 (106-175)||(5992162-5992231)
[»] chr1 (9 HSPs)
chr1 (8-140)||(39092904-39093036)
chr1 (71-175)||(49650144-49650248)
chr1 (71-175)||(26991735-26991839)
chr1 (8-113)||(15456861-15456966)
chr1 (71-175)||(30627094-30627198)
chr1 (106-168)||(28522846-28522908)
chr1 (85-175)||(46688719-46688809)
chr1 (71-175)||(35718796-35718900)
chr1 (110-168)||(15457355-15457413)
[»] chr8 (6 HSPs)
chr8 (80-175)||(5423512-5423607)
chr8 (71-138)||(1581514-1581581)
chr8 (75-175)||(7177021-7177121)
chr8 (71-175)||(14523131-14523235)
chr8 (102-175)||(11767784-11767857)
chr8 (75-140)||(11989712-11989777)
[»] chr4 (12 HSPs)
chr4 (71-175)||(51175551-51175655)
chr4 (71-168)||(12191549-12191647)
chr4 (71-173)||(44991729-44991831)
chr4 (82-175)||(39720246-39720339)
chr4 (84-166)||(38068553-38068635)
chr4 (83-164)||(13678594-13678675)
chr4 (82-167)||(45832099-45832184)
chr4 (75-168)||(53096248-53096341)
chr4 (75-173)||(27064416-27064514)
chr4 (85-175)||(38068129-38068219)
chr4 (28-69)||(53096220-53096261)
chr4 (82-167)||(56397059-56397144)
[»] chr7 (11 HSPs)
chr7 (72-175)||(2842588-2842691)
chr7 (71-175)||(584095-584199)
chr7 (71-167)||(8488681-8488777)
chr7 (85-175)||(17503205-17503295)
chr7 (85-175)||(17549919-17550009)
chr7 (71-167)||(44592125-44592221)
chr7 (83-164)||(1837800-1837881)
chr7 (75-175)||(48767877-48767977)
chr7 (75-129)||(8352683-8352737)
chr7 (109-175)||(43788592-43788658)
chr7 (71-167)||(8515514-8515610)
[»] chr5 (6 HSPs)
chr5 (82-168)||(565391-565477)
chr5 (82-175)||(15958699-15958792)
chr5 (75-168)||(4898222-4898316)
chr5 (71-175)||(8516886-8516990)
chr5 (81-175)||(31046350-31046444)
chr5 (75-175)||(31066292-31066392)


Alignment Details
Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 171 - 298
Target Start/End: Original strand, 5684830 - 5684957
Alignment:
Q  171 ataaagtacctaatgaagttgaagatttcttcttttttcctccaaaccctttttatccaccacctattatccctaatccacttcaacctccacctttgat 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5684830 ataaagtacctaatgaagttgaagatttcttcttttttcctccaaaccctttttttccaccacctattatccctaatccacttcaacctccacctttgat 5684929  T
Q  271 tcctaaccctttgcaaccaccacctttg 298  Q
    ||||||||||||||||||||||||||||    
T  5684930 tcctaaccctttgcaaccaccacctttg 5684957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 5693732 - 5693890
Alignment:
Q  8 acttgcaaaagaaataatattttatgtactttaaatttgagtcgttattagtgggacatatttaagatagtgagacatatttaagtgcttttagttgaag 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| || |||    
T  5693732 acttgcaaaagaaataatattttaagtactttaaatttgagtcgttattagtgtgacatatttaagatagtgagatatatttaagtacttttaatttaag 5693831  T
Q  108 tccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    ||||||||||||||||         || ||||||||||||||||| ||||||||||||||| ||||||    
T  5693832 tccttattaatgtatt---------gttattgagttattaatatgtactttcattaaaaaattataaa 5693890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 17096073 - 17095983
Alignment:
Q  85 tatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    ||||||||| |||||  ||||||||||||||| |||||||||||| ||||||| || |  |||||| | ||||| ||||||||| ||||||    
T  17096073 tatttaagtacttttcattgaagtccttattagtgtattgtcattggagtcatagaatccttaataggtacttttattaaaaaattataaa 17095983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 27753170 - 27753070
Alignment:
Q  75 tagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataa 174  Q
    ||||| ||| ||||||||| |||||  ||  ||||||||||| ||||||| ||||||||||||||| |  |||||| | ||||| ||||||||| |||||    
T  27753170 tagtgggacttatttaagtacttttcatttgagtccttattagtgtattgacatttgagtcattgaatccttaataggtacttttattaaaaaattataa 27753071  T
Q  175 a 175  Q
    |    
T  27753070 a 27753070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 29465327 - 29465258
Alignment:
Q  106 agtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    |||| |||||| || ||||||||||||||||||||||  |||||||  ||||||||||||| | ||||||    
T  29465327 agtcattattagtgaattgtcatttgagtcattgagtccttaatataaactttcattaaaatattataaa 29465258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 6812094 - 6812159
Alignment:
Q  85 tatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaata 150  Q
    ||||||||| |||||  ||| |||| |||||| ||||||| |||| ||||||||||||| ||||||    
T  6812094 tatttaagtacttttcattggagtctttattagtgtattgccattggagtcattgagttcttaata 6812159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 39446285 - 39446450
Alignment:
Q  8 acttgcaaaagaaataatattttatgtactttaaatttgagtcgttattagtgggacatatttaagatagtgagacatatttaagtgcttttagttgaag 107  Q
    ||||||||||||| |||||| ||| |||||||||||| | ||| ||||||||||||| |||||||| |||||  |||||||||||| |||||| ||| ||    
T  39446285 acttgcaaaagaagtaatatattaagtactttaaattggggtccttattagtgggacttatttaagttagtggaacatatttaagtacttttaattggag 39446384  T
Q  108 tccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    ||||||  | |||||||||||| ||||||||||||  |||||| | | ||||||||||||| ||||||    
T  39446385 tcctta--agtgtattgtcattggagtcattgagtccttaataagtattttcattaaaaaattataaa 39446450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 11916310 - 11916183
Alignment:
Q  8 acttgcaaaagaaataatattttatgtactttaaatttgagtcgttattagtgggacatatttaagatagtgagacatatttaagtgcttttagttgaag 107  Q
    ||||||||||||| |||||||||| ||||||| |||| ||| | |||||||| |||| |||||||| ||||| ||  |||||||||  ||||| ||  ||    
T  11916310 acttgcaaaagaagtaatattttacgtacttttaattggagcctttattagttggacctatttaagttagtgtgagctatttaagtatttttaatttgag 11916211  T
Q  108 tccttattaatgtattgtcatttgagtc 135  Q
    || |||||| ||||||| |||| |||||    
T  11916210 tctttattagtgtattgacattagagtc 11916183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 12184760 - 12184830
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagt 142  Q
    ||||||||| ||||||||||||| |||||  ||||| |  |||||| |||||||||||| ||||||||||||    
T  12184760 aagatagtgggacatatttaagtacttttcattgaaatt-ttattagtgtattgtcattggagtcattgagt 12184830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 25749905 - 25749847
Alignment:
Q  110 cttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaa 168  Q
    ||||||| ||||||| |||| ||||||||||||  |||| ||| |||||||||||||||    
T  25749905 cttattagtgtattgccattggagtcattgagtccttaacatgtactttcattaaaaaa 25749847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 21848288 - 21848188
Alignment:
Q  75 tagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataa 174  Q
    ||||| ||| ||||||||| |||||  ||| |||| | |||| |||||| ||||| ||||||||||||  |||||| | | ||| ||||||||| |||||    
T  21848288 tagtgggacctatttaagtactttttattggagtcttgattagtgtattttcattggagtcattgagtccttaataagtatttttattaaaaaattataa 21848189  T
Q  175 a 175  Q
    |    
T  21848188 a 21848188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 30733083 - 30732955
Alignment:
Q  22 taatattttatgtactttaaatttgagtcgttattagtgggacatatttaagatagtgagacatatttaagtgcttttagttgaagtccttattaatgta 121  Q
    |||||||||| |||||||||||| || || || |||||||||| |||||||| || |||||||||||||| | |||||| ||| | ||||||||||||||    
T  30733083 taatattttaagtactttaaattggaatccttgttagtgggacctatttaagttaatgagacatatttaactacttttaattggaatccttattaatgta 30732984  T
Q  122 ttgtcatttgagtcattgagttattaata 150  Q
    |||||||| ||||||||||||| ||||||    
T  30732983 ttgtcattggagtcattgagttcttaata 30732955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 25701614 - 25701516
Alignment:
Q  77 gtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    ||||||| ||||||||| |||||| ||||||| ||||||| |||||||||||| ||||| |||| |  |||||| | ||||||||||||||| ||||||    
T  25701614 gtgagacttatttaagtacttttaattgaagttcttattagtgtattgtcattggagtctttgaatccttaataggtactttcattaaaaaattataaa 25701516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 38585906 - 38586068
Alignment:
Q  13 caaaagaaataatattttatgtactttaaatttgagtcgttattagtgggacatatttaagatagtgagacatatttaagtgcttttagttgaagtcctt 112  Q
    |||||||| |||||||||   |||||| |||||||||| ||||||||   ||||||||||| | |||  || |||||||||   |||  ||| |||| ||    
T  38585906 caaaagaagtaatatttttattacttttaatttgagtccttattagtaaaacatatttaagctggtggaacctatttaagtatatttgattggagtcttt 38586005  T
Q  113 attaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    |||| |||||||||||| ||||||||||||  ||||||   ||||||||||||||| ||||||    
T  38586006 attagtgtattgtcattggagtcattgagtccttaatagctactttcattaaaaaattataaa 38586068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 19611174 - 19611271
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaa 168  Q
    ||||||||| ||||||||||||| |||||  ||||| | ||||||| |||||||||||| ||||||||||||  |||||| | ||||| |||||||||    
T  19611174 aagatagtgggacatatttaagtacttttcattgaatttcttattagtgtattgtcattggagtcattgagtccttaataggtacttttattaaaaaa 19611271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 13778206 - 13778304
Alignment:
Q  70 taagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaa 168  Q
    |||| ||||||||||||||||||  |||||  ||| |||| || |||||||||||||||| ||||||||||||  |||||||| ||||| ||| |||||    
T  13778206 taagttagtgagacatatttaagcacttttcattggagtctttgttaatgtattgtcattagagtcattgagtccttaatatgaacttttattgaaaaa 13778304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 1294572 - 1294658
Alignment:
Q  89 taagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    ||||| |||||  ||| ||||||||||| |||||||||||| ||| ||||||||  |||||||| ||||| ||||||||| ||||||    
T  1294572 taagtacttttcattggagtccttattagtgtattgtcattggagacattgagtccttaatatgtacttttattaaaaaattataaa 1294658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 173
Target Start/End: Original strand, 55222426 - 55222528
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaact 170  Q
    |||||||||||||||||||||||  ||||  ||| |||  |||||| |||||||||||| ||||||||||||  |||| | | ||||| ||||||||| |    
T  55222426 aagatagtgagacatatttaagtaattttcattggagtatttattagtgtattgtcattggagtcattgagtccttaacaagtacttttattaaaaaatt 55222525  T
Q  171 ata 173  Q
    |||    
T  55222526 ata 55222528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 168
Target Start/End: Original strand, 40243108 - 40243167
Alignment:
Q  109 ccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaa 168  Q
    |||||||| |||||||||||| |||||||||| | ||||| ||  |||||||||||||||    
T  40243108 ccttattagtgtattgtcattagagtcattgaatcattaaaatatactttcattaaaaaa 40243167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 48098405 - 48098439
Alignment:
Q  106 agtccttattaatgtattgtcatttgagtcattga 140  Q
    |||||||||||||||||||||||| ||||||||||    
T  48098405 agtccttattaatgtattgtcattggagtcattga 48098439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 5992231 - 5992162
Alignment:
Q  106 agtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    ||||||||||| ||||||||||||  |||||||||||  ||||||   ||||| ||||||||| ||||||    
T  5992231 agtccttattagtgtattgtcattgaagtcattgagtccttaataaatacttttattaaaaaattataaa 5992162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 39092904 - 39093036
Alignment:
Q  8 acttgcaaaagaaataatattttatgtactttaaatttgagtcgttattagtgggacatatttaagatagtgagacatatttaagtgcttttagttgaag 107  Q
    |||||||||  || |||||||||| |||||||||||| ||||  ||||||||| ||| |||||||| ||||| ||||||||||||| |||||| ||| ||    
T  39092904 acttgcaaacaaagtaatattttaagtactttaaattagagttcttattagtgtgacctatttaagttagtgggacatatttaagtacttttaattggag 39093003  T
Q  108 tccttattaatgtattgtcatttgagtcattga 140  Q
    ||||||||| |||||||||||| ||||||||||    
T  39093004 tccttattattgtattgtcattggagtcattga 39093036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 49650144 - 49650248
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaact 170  Q
    ||||||||||||||||||||||| |||||  ||| |||||||||||||||||||| ||| ||||||||||||  |||||| | ||||| ||||||||| |    
T  49650144 aagatagtgagacatatttaagtacttttcattggagtccttattaatgtattgttattggagtcattgagtccttaataagtacttttattaaaaaatt 49650243  T
Q  171 ataaa 175  Q
    |||||    
T  49650244 ataaa 49650248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 26991839 - 26991735
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaact 170  Q
    ||||||||||||||||||||||| |||||  ||| ||||||||||| |||||||| ||| ||||||||||||  |||||  | ||||| ||||||||| |    
T  26991839 aagatagtgagacatatttaagtacttttcattggagtccttattagtgtattgttattggagtcattgagtccttaatgggtacttttattaaaaaatt 26991740  T
Q  171 ataaa 175  Q
    |||||    
T  26991739 ataaa 26991735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 15456861 - 15456966
Alignment:
Q  8 acttgcaaaagaaataatattttatgtactttaaatttgagtcgttattagtgggacatatttaagatagtgagacatatttaagtgcttttagttgaag 107  Q
    ||||||||||||  |||| ||| | |||||||||||| ||||| |||||| || ||| |||||||| ||||| |||||||||||||  ||||| ||| ||    
T  15456861 acttgcaaaagaggtaatgtttaaagtactttaaattggagtccttattattgtgacctatttaagttagtgtgacatatttaagtatttttaattggag 15456960  T
Q  108 tcctta 113  Q
    ||||||    
T  15456961 tcctta 15456966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 30627198 - 30627094
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaact 170  Q
    ||||||||| |||||||||||||  ||||  ||  |||| ||||||||||||||||||| |||||||| |||  |||||| | ||||| ||||||||| |    
T  30627198 aagatagtgggacatatttaagtatttttcatttgagtctttattaatgtattgtcattggagtcattaagtccttaataggtacttttattaaaaaatt 30627099  T
Q  171 ataaa 175  Q
    |||||    
T  30627098 ataaa 30627094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 28522908 - 28522846
Alignment:
Q  106 agtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaa 168  Q
    ||||||||||| |||||||||||| ||||||||||||  |||||||| ||||| |||||||||    
T  28522908 agtccttattagtgtattgtcattggagtcattgagtccttaatatgtacttttattaaaaaa 28522846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 46688809 - 46688719
Alignment:
Q  85 tatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    ||||||||| |||||  ||| |||| |||||| |||||||||||| |||||||||| | |||||||   ||||| ||||||||| ||||||    
T  46688809 tatttaagtacttttcattggagtcattattagtgtattgtcattggagtcattgaatcattaatagatacttttattaaaaaattataaa 46688719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 35718900 - 35718796
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaact 170  Q
    ||||||||||||||||||||||| |||||  |||  |||||| ||| ||||||| |||| |||||||| |||  ||||||   | ||| ||||||||| |    
T  35718900 aagatagtgagacatatttaagtacttttcattggggtccttgttagtgtattgccattggagtcattaagtccttaatagatatttttattaaaaaatt 35718801  T
Q  171 ataaa 175  Q
    |||||    
T  35718800 ataaa 35718796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 15457355 - 15457413
Alignment:
Q  110 cttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaa 168  Q
    ||||||| |||||||||||| || |||| ||||| |||||||| |||| ||||||||||    
T  15457355 cttattagtgtattgtcattggaatcatcgagtttttaatatgtacttacattaaaaaa 15457413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 80 - 175
Target Start/End: Original strand, 5423512 - 5423607
Alignment:
Q  80 agacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    |||||||||||||| |||||  ||||||||||||||| |||||||||||| |||||||||||| ||||||||| ||||| ||||||||| ||||||    
T  5423512 agacatatttaagtacttttcattgaagtccttattagtgtattgtcattggagtcattgagtcattaatatgtacttttattaaaaaattataaa 5423607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 1581514 - 1581581
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcatt 138  Q
    ||||||||| ||||||||||||| |||||  ||| |||||||||||||||||||||||| ||||||||    
T  1581514 aagatagtgggacatatttaagtacttttcattggagtccttattaatgtattgtcattcgagtcatt 1581581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 7177121 - 7177021
Alignment:
Q  75 tagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataa 174  Q
    ||||| ||| ||||||||| |||||  ||| || |||||||| |||||||||||| ||||||||||||  ||||||   ||||||||||||||| |||||    
T  7177121 tagtgggacttatttaagtacttttcattggagcccttattagtgtattgtcattggagtcattgagtccttaatagatactttcattaaaaaattataa 7177022  T
Q  175 a 175  Q
    |    
T  7177021 a 7177021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 14523235 - 14523131
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaact 170  Q
    |||||||||  |||||||||||| |||||   || ||||||||||| ||||||||||||  |||||||||||| ||||||   ||||| ||||||||| |    
T  14523235 aagatagtggaacatatttaagtacttttcagtggagtccttattagtgtattgtcattgaagtcattgagttcttaataactacttttattaaaaaatt 14523136  T
Q  171 ataaa 175  Q
    |||||    
T  14523135 ataaa 14523131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 11767857 - 11767784
Alignment:
Q  102 ttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    ||||||||| | ||| |||||||||||| | ||||||||||  |||||||| | ||| ||||||||| ||||||    
T  11767857 ttgaagtccctgttagtgtattgtcattggtgtcattgagtacttaatatgaatttttattaaaaaaatataaa 11767784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 11989777 - 11989712
Alignment:
Q  75 tagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattga 140  Q
    ||||||||||||||||||  |||||  ||| ||||| | ||| |||||||||||| ||||||||||    
T  11989777 tagtgagacatatttaagcacttttcattggagtccatgttagtgtattgtcattggagtcattga 11989712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 51175551 - 51175655
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaact 170  Q
    ||||||||| |||||||||||||  ||| | ||| ||||||||||||||||||| |||| ||||||||||||  |||||| | ||||| ||||||||| |    
T  51175551 aagatagtgggacatatttaagtattttgaattggagtccttattaatgtattgccattggagtcattgagtccttaataggtacttttattaaaaaatt 51175650  T
Q  171 ataaa 175  Q
    |||||    
T  51175651 ataaa 51175655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 12191549 - 12191647
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagt-tattaatatggactttcattaaaaaa 168  Q
    |||||||||||||||||||||||  ||||  ||| ||||||||||| |||||||||||| |||||||||||| | |||||| | ||||| |||||||||    
T  12191549 aagatagtgagacatatttaagtatttttcattggagtccttattagtgtattgtcattggagtcattgagtcttttaataagtacttttattaaaaaa 12191647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 173
Target Start/End: Complemental strand, 44991831 - 44991729
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaact 170  Q
    ||||||||| |||||||||||||  ||||  ||| ||||||||||| ||||||| |||| ||||||||||||  |||||| | ||||| ||||||||| |    
T  44991831 aagatagtgggacatatttaagtatttttcattggagtccttattagtgtattgccattggagtcattgagtccttaataggtacttttattaaaaaatt 44991732  T
Q  171 ata 173  Q
    |||    
T  44991731 ata 44991729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 39720246 - 39720339
Alignment:
Q  82 acatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    |||||||||||| |||||| ||| |||| |||||| |||||||| |||  |||||||||||| |||||| | ||||| ||||||||| ||||||    
T  39720246 acatatttaagtacttttaattggagtcattattagtgtattgtgattgaagtcattgagttcttaataggtacttttattaaaaaattataaa 39720339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 38068553 - 38068635
Alignment:
Q  84 atatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaa 166  Q
    |||||||||| |||||  ||| ||||||||||| |||||||||||| ||||||||||||  |||||| | ||||| |||||||    
T  38068553 atatttaagtacttttctttggagtccttattagtgtattgtcattagagtcattgagtccttaataggtacttttattaaaa 38068635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 13678675 - 13678594
Alignment:
Q  83 catatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaa 164  Q
    ||||||||||| |||||  ||  ||||||||||| |||||||||||| ||||||||||||  |||||| | ||||| |||||    
T  13678675 catatttaagtacttttcatttgagtccttattagtgtattgtcattggagtcattgagtctttaataagtacttttattaa 13678594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 45832184 - 45832099
Alignment:
Q  82 acatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaa 167  Q
    |||||||||||| | |||  ||| ||||||||||| ||||||| |||| |||| |||||||| |||||| | ||||| ||||||||    
T  45832184 acatatttaagtacctttcattggagtccttattagtgtattgccattggagtgattgagttcttaataagtacttttattaaaaa 45832099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 53096248 - 53096341
Alignment:
Q  75 tagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaa 168  Q
    ||||| |||||||| |||| | |||| ||  |||| |||||| ||||||||| || ||||||||||||  |||||||| | |||||||||||||    
T  53096248 tagtgggacatattcaagtacgtttaattcgagtctttattagtgtattgtcgttagagtcattgagtccttaatatgtaatttcattaaaaaa 53096341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 27064514 - 27064416
Alignment:
Q  75 tagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactata 173  Q
    |||||||||||||||||    ||||  ||| ||||| ||||| |||||||||||| |||||||||| || ||||||   ||||| ||||||||| ||||    
T  27064514 tagtgagacatatttaaacagtttttattggagtccctattagtgtattgtcattagagtcattgaattcttaataaaaacttttattaaaaaattata 27064416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 38068129 - 38068219
Alignment:
Q  85 tatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    ||||||||| |||||  ||| ||||||||||| |||| | ||||| ||| |||||||| ||||||||| | ||| ||||||| | ||||||    
T  38068129 tatttaagtactttttattggagtccttattagtgtactctcattggagccattgagtcattaatatgtatttttattaaaatattataaa 38068219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 53096220 - 53096261
Alignment:
Q  28 tttatgtactttaaatttgagtcgttattagtgggacatatt 69  Q
    |||||||||||||||||  |||| ||||||||||||||||||    
T  53096220 tttatgtactttaaattgaagtctttattagtgggacatatt 53096261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 167
Target Start/End: Complemental strand, 56397144 - 56397059
Alignment:
Q  82 acatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaa 167  Q
    ||||||||||||  ||||  ||||||||||||||   ||||||||||| |||||||| | |  |||||| | ||||||||||||||    
T  56397144 acatatttaagtatttttcattgaagtccttattcgcgtattgtcattggagtcattaaatccttaataggtactttcattaaaaa 56397059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 2842588 - 2842691
Alignment:
Q  72 agatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaacta 171  Q
    |||||||| ||||||||||| |  ||||  ||| ||||||||||| |||||||||||| ||||||||||||  |||||||| ||||| ||||||| | ||    
T  2842588 agatagtgggacatatttaaatatttttcattggagtccttattagtgtattgtcattggagtcattgagtccttaatatgtacttttattaaaatatta 2842687  T
Q  172 taaa 175  Q
    ||||    
T  2842688 taaa 2842691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 584095 - 584199
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaact 170  Q
    ||||||||||||||||||||||| |||||  ||| |||| || ||| ||||||| |||| ||||||||||||  ||||||   ||||| ||||||||| |    
T  584095 aagatagtgagacatatttaagtacttttcattggagtctttgttagtgtattgccattggagtcattgagtccttaatagatacttttattaaaaaatt 584194  T
Q  171 ataaa 175  Q
    |||||    
T  584195 ataaa 584199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 8488777 - 8488681
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaa 167  Q
    ||||||||| |||||||||||||  ||||  ||||||||||||||| ||||||| |||| |||||||||| |  |||||| | ||||| ||||||||    
T  8488777 aagatagtgggacatatttaagtattttttattgaagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaaa 8488681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 17503295 - 17503205
Alignment:
Q  85 tatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    |||||||||  ||||  ||| ||||||||||| |||||||||||| |||||||||| |  |||||||| | ||||||||||||| ||||||    
T  17503295 tatttaagtattttttattggagtccttattagtgtattgtcattggagtcattgaatccttaatatgtaatttcattaaaaaattataaa 17503205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 175
Target Start/End: Original strand, 17549919 - 17550009
Alignment:
Q  85 tatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    |||||||||  ||||  ||| ||||||||||| |||||||||||| |||||||||| |  |||||||| | ||||||||||||| ||||||    
T  17549919 tatttaagtattttttattggagtccttattagtgtattgtcattggagtcattgaatccttaatatgtaatttcattaaaaaattataaa 17550009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 44592125 - 44592221
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaa 167  Q
    |||||| || ||||||||||||| |||||  ||  ||||||||||| |||||||| ||| ||||||| ||||| |||||| | ||||| ||||||||    
T  44592125 aagataatgggacatatttaagtacttttcattagagtccttattagtgtattgttattggagtcatcgagttcttaataggtacttttattaaaaa 44592221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 1837800 - 1837881
Alignment:
Q  83 catatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaa 164  Q
    ||||||||||| |||||  ||  ||||||||||| |||||||||||| ||||||||||||  |||||| | ||||| |||||    
T  1837800 catatttaagtactttttatttgagtccttattagtgtattgtcattggagtcattgagtctttaataagtacttttattaa 1837881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 48767877 - 48767977
Alignment:
Q  75 tagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataa 174  Q
    ||||||||||||||||||  |||||  ||| ||||| | ||  ||||||  |||| ||||||||||||  |||||| | ||||||||||||||| |||||    
T  48767877 tagtgagacatatttaagcacttttcattggagtccctgttggtgtattaccattggagtcattgagtccttaataggaactttcattaaaaaattataa 48767976  T
Q  175 a 175  Q
    |    
T  48767977 a 48767977  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 8352683 - 8352737
Alignment:
Q  75 tagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatt 129  Q
    ||||||||| |||||||||  ||||  ||||||||||||||| ||||||||||||    
T  8352683 tagtgagacttatttaagtatttttcattgaagtccttattagtgtattgtcatt 8352737  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 43788592 - 43788658
Alignment:
Q  109 ccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    |||||||| ||||||| |||| ||||||||||||  |||||| | ||||| ||||||||| ||||||    
T  43788592 ccttattagtgtattgccattggagtcattgagtccttaataggtacttttattaaaaaattataaa 43788658  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 8515610 - 8515514
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaa 167  Q
    |||| |||| |||||||||||||  ||||  ||  ||||||||||| ||||||| |||| |||||||||| |  |||||| | ||||| ||||||||    
T  8515610 aagacagtgggacatatttaagtattttttattcgagtccttattagtgtattgccattggagtcattgaatccttaataggtacttttattaaaaa 8515514  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 565391 - 565477
Alignment:
Q  82 acatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaa 168  Q
    |||||||||||| |||||   || ||||||||||| |||||||||||| |||| |||||||  |||||| | |||||||||||||||    
T  565391 acatatttaagtacttttcaatggagtccttattagtgtattgtcattggagttattgagtccttaataagtactttcattaaaaaa 565477  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 175
Target Start/End: Complemental strand, 15958792 - 15958699
Alignment:
Q  82 acatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    |||||||||||| |||||  ||| ||||||||||| |||||||||||| |||| |||||||  |||||| | | ||| ||||||||| ||||||    
T  15958792 acatatttaagtacttttcattggagtccttattagtgtattgtcattggagttattgagtctttaataggtaattttattaaaaaattataaa 15958699  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 4898222 - 4898316
Alignment:
Q  75 tagtgagacatatttaagtgcttttagttgaagtcc-ttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaa 168  Q
    ||||||||| ||||||||| |||||  ||| ||||| |||||| ||||||||||||  |||  ||||||| |||||| | |||||||||||||||    
T  4898222 tagtgagacttatttaagtacttttcattggagtcccttattagtgtattgtcattgaagttgttgagttcttaataggtactttcattaaaaaa 4898316  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 8516990 - 8516886
Alignment:
Q  71 aagatagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaact 170  Q
    |||||||||  ||||||||||||  ||||  ||| ||| | | ||| |||||||||||| ||||||||||||  |||||| | ||||| ||||||||| |    
T  8516990 aagatagtggaacatatttaagtattttttattggagttcatgttagtgtattgtcattagagtcattgagtccttaataagtacttttattaaaaaatt 8516891  T
Q  171 ataaa 175  Q
    |||||    
T  8516890 ataaa 8516886  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 31046444 - 31046350
Alignment:
Q  81 gacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataaa 175  Q
    |||||||||||||  ||||  ||||| ||| ||||| ||||||||| || ||||||||||||  ||||||   ||||| ||||||||| ||||||    
T  31046444 gacatatttaagtattttttattgaaatccatattagtgtattgtctttagagtcattgagtccttaatagatacttttattaaaaaattataaa 31046350  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 175
Target Start/End: Complemental strand, 31066392 - 31066292
Alignment:
Q  75 tagtgagacatatttaagtgcttttagttgaagtccttattaatgtattgtcatttgagtcattgagttattaatatggactttcattaaaaaactataa 174  Q
    ||||| |||||||||||||  ||||  ||| | ||| ||||| |||||||||||| |||||||| |||  ||||||   ||||| ||||||||| |||||    
T  31066392 tagtgggacatatttaagtatttttcattggaatccatattagtgtattgtcattagagtcattaagtccttaatagatacttttattaaaaaattataa 31066293  T
Q  175 a 175  Q
    |    
T  31066292 a 31066292  T

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