View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_66 (Length: 307)
Name: NF2729_low_66
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_66 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 17701535 - 17701761
Alignment:
| Q |
1 |
atggaaatagggtgaagaaaaagaactcttcatgatcgatgtagcagtggaattgaaccgagaaaatagggtttgaagaaacaaagcgatggaaagcgtg |
100 |
Q |
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| T |
17701535 |
atggaaatagggtgaagaaaaagaactcttcatgatcgatgtagcagtggaattgaactgagaaaatagggtttgaagaaacaaagcgatggaaagcgtg |
17701634 |
T |
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| Q |
101 |
gatgtgaagcaccaaagagatcgcgcgacgtttataaagcaatagcttgggttttccgaagaaatagctagggtttatcttaatttatctttctttcatc |
200 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17701635 |
gatgtgaagcaccaaacagatcgcgcgaggtttataaagcaatagctagggttttccgaagaaatagctagggtttatcttaatttatctttctttcatc |
17701734 |
T |
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| Q |
201 |
aaacttcaactttgtcaccgttggttt |
227 |
Q |
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| T |
17701735 |
aaacttcaactttgtcaccgttggttt |
17701761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 17662559 - 17662333
Alignment:
| Q |
1 |
atggaaatagggtgaagaaaaagaactcttcatgat-----------cgatgtagcagtggaattgaaccgagaaaatagggtttgaagaaacaaagcga |
89 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| | ||||||||||||||||| |||||||||| |
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| T |
17662559 |
atggaaatagggtgaagaaaaagaactcatcatgatgatgttgtgatcgatgtagcagaggaattgaactgtgaaaatagggtttgaagcaacaaagcga |
17662460 |
T |
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| Q |
90 |
tggaaagcgtggatgtgaagcaccaaagagatcgcgcgacgtttataaagcaatagcttgg-gttttccgaagaaatagctagggtttatcttaatttat |
188 |
Q |
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|||||||||||||||||||||| ||||||| ||||||| |||||||||| ||||| | || ||||||||||||||||||||||||||||||| ||| | |
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| T |
17662459 |
tggaaagcgtggatgtgaagcaggaaagagaacgcgcgaggtttataaagtaatagttaggacttttccgaagaaatagctagggtttatcttactttct |
17662360 |
T |
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| Q |
189 |
ctttctttcatcaaacttcaactttgt |
215 |
Q |
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| T |
17662359 |
ctttctttcatcaaacttcaactttgt |
17662333 |
T |
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