View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_70 (Length: 296)
Name: NF2729_low_70
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_70 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 37216778 - 37217054
Alignment:
| Q |
16 |
acatttcataacctttttaataacggtgctcgtagctggcttaatagctacccaccctataactccaacactttatttaacgttgtagaatccgaatttc |
115 |
Q |
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| T |
37216778 |
acatttcataacctttttaataacggtgctcgtagctggcttaatagctactcaccctataactccaacactttatttaacgttgtagaatccgaatttc |
37216877 |
T |
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| Q |
116 |
tcctaactcgatcattatcttcacaattaagctagacatcatttaaatcataaacaagtgtgtcaattacgatgtcgctgtcattcactctataggtatc |
215 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
37216878 |
tcttaactcgatcattatcttcacaattaagctagacatcatttaaatcataaacaagtgtgtcaattacaatgtcgccgtcattcactctataggtatc |
37216977 |
T |
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| Q |
216 |
ccccaaatcataactaaaggaatcgaaattagatctccttcgtttatatgaattcttcaaatttaatctgtgctgct |
292 |
Q |
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| T |
37216978 |
ccccaaatcataactaaaggaatcgaaattagatctccttcgtttatatgaattcttcaaatttaatctatgctgct |
37217054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 287
Target Start/End: Complemental strand, 38795423 - 38795393
Alignment:
| Q |
257 |
gtttatatgaattcttcaaatttaatctgtg |
287 |
Q |
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| T |
38795423 |
gtttatatgaattcttcaaatttaatctgtg |
38795393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 13369929 - 13369900
Alignment:
| Q |
257 |
gtttatatgaattcttcaaatttaatctgt |
286 |
Q |
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| T |
13369929 |
gtttatatgaattcttcaaatttaatctgt |
13369900 |
T |
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