View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_72 (Length: 292)
Name: NF2729_low_72
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 145 - 279
Target Start/End: Original strand, 2226687 - 2226821
Alignment:
| Q |
145 |
cgcaattccctcagcacatccaatggcaagattcattcgtcgattccaatcaagaaggcattctgctgattgtggtccatgaagatgggagaacaagtta |
244 |
Q |
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| T |
2226687 |
cgcaactccctcagcacatccaatggcaagattcattcatcgattccaatcaagaaggcattctgctgattgtggtccatgaagatgggagaacaagtta |
2226786 |
T |
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| Q |
245 |
aaatttggcatataatcatacacaattaaccgttc |
279 |
Q |
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| T |
2226787 |
aaatttggcatataatcatacacaattaaccgttc |
2226821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 86
Target Start/End: Original strand, 2226653 - 2226682
Alignment:
| Q |
57 |
gattttgcagttaggaaaatttcaagtgtg |
86 |
Q |
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| T |
2226653 |
gattttgcagttaggaaaatttcaagtgtg |
2226682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 279
Target Start/End: Complemental strand, 44771867 - 44771729
Alignment:
| Q |
141 |
ctcacgcaattccctcagcacatccaatggcaagattcattcgtcgattccaatcaagaaggcattctgctgattgtggtccatgaagatgggagaacaa |
240 |
Q |
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| T |
44771867 |
ctcacacaattccctcagcagacccgattgcaatattcattcgtcgattccaatcaaggaggctttctgtcgagtgctgtccgtgaagatgagagagtag |
44771768 |
T |
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| Q |
241 |
gttaaaatttggcatataatcatacacaattaaccgttc |
279 |
Q |
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| T |
44771767 |
gctcaaattcggcatatagtcatatacaattagccgttc |
44771729 |
T |
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