View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2729_low_74 (Length: 290)
Name: NF2729_low_74
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_74 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 1216164 - 1216425
Alignment:
| Q |
18 |
cattcagttttggttataaaccaaactttgaggagggagggagggttcaacaagaaaacctaatgttttgttttgtcgcttcagatatggaagtagatcc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1216164 |
cattcagttttggttataaaccaaactttgaggagggagggagggttcaacaagaaaacctaatgttttgttttgtcgcttcagatatggaagtagatcc |
1216263 |
T |
|
| Q |
118 |
aaaagatttaaaacgcaaagtacaatttgaggagggagtgttcaacaagaaacctcgccttctaatatttcatttaaggtagtacaaaaatactaatatg |
217 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
1216264 |
aaaagatttaaaacgcagagtacaatttgaggagggagtgttcaacaagaaacctcgccttctaacatttcgtttaaggtagtacaaaaatactaatatg |
1216363 |
T |
|
| Q |
218 |
ttatgcgttcttaaagaagcatatgcttatataaacatgtacttatgtacgtatgcattcat |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1216364 |
ttatgcgttcttaaagaagcatatgcttatataaacatgtacttacgtacgtatgcattcat |
1216425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University