View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_78 (Length: 282)
Name: NF2729_low_78
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_78 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 38743756 - 38743504
Alignment:
| Q |
14 |
aggtaggagataaagttgaagtatgcagcaaagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgt |
113 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
38743756 |
aggtaggagataaagtagaagtatgcagcaaagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtctagagagtggaaaatatgt |
38743657 |
T |
|
| Q |
114 |
gatccgttacaagaatcttcttaaagatgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgcccattaccaccacgtgttcgtaat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
38743656 |
gatccgttacaagaatcttcttaaagatgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgtccattaccgccacgtgttcgtaat |
38743557 |
T |
|
| Q |
214 |
cctttaaggtttgaactcaatcagaaagttgatgtgtttgataacgatggttg |
266 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38743556 |
ccttcgaggtttgaactcaatcagaaagttgacgtgtttgataacgatggttg |
38743504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 38788651 - 38788903
Alignment:
| Q |
14 |
aggtaggagataaagttgaagtatgcagcaaagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
38788651 |
aggtaggagataaagttgaagtatgcagcaaagaagaagggtttgtaggttcgtactttgaagctacaattgtttcatgtctagagagtggaaaatatgt |
38788750 |
T |
|
| Q |
114 |
gatccgttacaagaatcttcttaaagatgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgcccattaccaccacgtgttcgtaat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| |
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| T |
38788751 |
gatccgttacaagaatcttcttaaagatgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgtccattaccgccacgtgttcataat |
38788850 |
T |
|
| Q |
214 |
cctttaaggtttgaactcaatcagaaagttgatgtgtttgataacgatggttg |
266 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38788851 |
ccttggaggtttgaactcaatcagaaagttgatgtgtttgataacgatggttg |
38788903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 38782479 - 38782731
Alignment:
| Q |
14 |
aggtaggagataaagttgaagtatgcagcaaagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgt |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38782479 |
aggtaggagataaagtagaagtatgcagcgaagatgaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgt |
38782578 |
T |
|
| Q |
114 |
gatccgttacaagaatcttcttaaagatgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgcccattaccaccacgtgttcgtaat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||| |
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| T |
38782579 |
gatccgttacaagaatcttcttaaagatgacgagtcggaacttcttatggaaacactttttccaaaagatcttcgtccaataccaccacatgttcgtaat |
38782678 |
T |
|
| Q |
214 |
cctttaaggtttgaactcaatcagaaagttgatgtgtttgataacgatggttg |
266 |
Q |
| |
|
||||| | |||| |||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
38782679 |
cctttgaagtttaaactcaatcaaaaagttgatgtatttgataacgatggttg |
38782731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 30963172 - 30962920
Alignment:
| Q |
14 |
aggtaggagataaagttgaagtatgcagcaaagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgt |
113 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||| |
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| T |
30963172 |
aggtaggagataaagtagaagtatgtagtaaagaagaagggtttgtaggttcatattttgaagccacaattgtttcatgccttgagagtggaaaatatgt |
30963073 |
T |
|
| Q |
114 |
gatccgttacaagaatcttcttaaagatgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgcccattaccaccacgtgttcgtaat |
213 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| |||| || ||||||||||| ||| |
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| T |
30963072 |
gattcgttacaagaatcttcttaaagacgacgaatctcaacttcttatggaaacacttttatcaaaagatcttcgtccatcacagccacgtgttcgaaat |
30962973 |
T |
|
| Q |
214 |
cctttaaggtttgaactcaatcagaaagttgatgtgtttgataacgatggttg |
266 |
Q |
| |
|
|||| | |||| |||||||||| ||||||||||| ||| |||| |||||||| |
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|
| T |
30962972 |
ccttctaagtttcaactcaatcaaaaagttgatgttttttataaagatggttg |
30962920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 30897296 - 30897349
Alignment:
| Q |
17 |
taggagataaagttgaagtatgcagcaaagaagaagggtttgtaggttcatact |
70 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| |||||| | ||||| |||| |
|
|
| T |
30897296 |
taggagataaagtagaagtatgcagtaaagaagaggggtttttcggttcgtact |
30897349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 2914593 - 2914844
Alignment:
| Q |
14 |
aggtaggagataaagttgaagtatgcagcaaagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttga---gagcggaaaata |
110 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| ||| | |||||||| |||| ||||| ||||| ||| |||||||||| ||| || ||||| |
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| T |
2914593 |
aggtaggagacaaagtagaagtatgcagcaaagaagatgggctcgtaggttcttactatgaaggcacaatcgtt-catgtcttgatgagagagggaaata |
2914691 |
T |
|
| Q |
111 |
tgtgatccgttacaagaatcttcttaaagatgacgaatcggaacttcttatggaaacactttttccaaaagatcttcgcccattaccaccacgtgttcgt |
210 |
Q |
| |
|
| | | || |||||||| |||||||||||||| || || |||||||| | ||| | |||||||| |||||||||| | | | |||||||||| |||||| |
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|
| T |
2914692 |
tacggttcgctacaagaaccttcttaaagatgatgagtctgaacttctcacggagatactttttctaaaagatctttgtctagtaccaccacgagttcgt |
2914791 |
T |
|
| Q |
211 |
aatcctttaaggtttgaactcaatcagaaagttgatgtgtttgataacgatgg |
263 |
Q |
| |
|
| |||| | ||| ||||||| ||||||||| |||| ||||| |||||||| |
|
|
| T |
2914792 |
aggccttctaagttcaaactcaaccagaaagtttatgtttttgacaacgatgg |
2914844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 5963760 - 5963683
Alignment:
| Q |
19 |
ggagataaagttgaagtatgcagcaaagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtctt |
96 |
Q |
| |
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||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
5963760 |
ggagacaaagtggaagtatgcagcaaagaagaagggtttgtgggttcatactttgaagctacaattgtttcgtgtctt |
5963683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 5963594 - 5963512
Alignment:
| Q |
184 |
cttcgcccattaccaccacgtgttcgtaatcctttaaggtttgaactcaatcagaaagttgatgtgtttgataacgatggttg |
266 |
Q |
| |
|
||||| |||||||| ||||||||||||| |||| |||| |||||||||| |||||||||| ||||| ||||||||||| |
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|
| T |
5963594 |
cttcgtccattaccgccacgtgttcgtagtcctcgtgagtttcaactcaatcaaaaagttgatgcttttgacaacgatggttg |
5963512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 29626882 - 29626990
Alignment:
| Q |
27 |
agttgaagtatgcagcaaagaagaagggtttgtaggttcatactttgaagctacaattgtttcatgtcttgagagcggaaaatatgtgatccgttacaag |
126 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| || || |||||||| || | ||||||| |||| || |||| ||| |||||||| | ||||||||| |
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|
| T |
29626882 |
agttgaagtatgcatcaaagatgaagggttttggggctcgtactttgaggccaaaattgttgcatgcctcgagaatggagaatatgtggttcgttacaag |
29626981 |
T |
|
| Q |
127 |
aatcttctt |
135 |
Q |
| |
|
|| |||||| |
|
|
| T |
29626982 |
aaccttctt |
29626990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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