View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_low_79 (Length: 279)

Name: NF2729_low_79
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_low_79
NF2729_low_79
[»] chr3 (2 HSPs)
chr3 (10-207)||(41248209-41248403)
chr3 (56-104)||(9408832-9408880)
[»] chr6 (1 HSPs)
chr6 (56-131)||(8400190-8400265)
[»] chr4 (1 HSPs)
chr4 (56-107)||(20510690-20510741)
[»] chr8 (1 HSPs)
chr8 (63-131)||(14633327-14633395)
[»] scaffold0057 (1 HSPs)
scaffold0057 (56-127)||(64664-64735)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 41248209 - 41248403
Alignment:
Q  10 cattcaatatattgaaccttaaacaactatatataagtttctaggctatataagaatcttaatctttaactagaatttcaaattatgattcttcattgtg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41248209 cattcaatatattgaaccttaaacaactatatataagtttctaggctatataagaatcttaatctttaactagaatttcaaattatgattcttcattgtg 41248308  T
Q  110 atttcgcttagaaatatcgaataataattgcatgcgattttgttttcacattcttggtaactacaaacgattttttgggtcaggtctaatgtccccca 207  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||| ||| ||  | |||||||||||| || |||||||||||||||||||||    
T  41248309 atttcgcttagaaatatc---taataattgcatgcgattttgttttcacactctcggccattacaaacgatttcttaggtcaggtctaatgtccccca 41248403  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 9408832 - 9408880
Alignment:
Q  56 tatataagaatcttaatctttaactagaatttcaaattatgattcttca 104  Q
    |||| ||||||||||||| ||||||||||||  || |||||||||||||    
T  9408832 tatagaagaatcttaatccttaactagaattctaatttatgattcttca 9408880  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 8400190 - 8400265
Alignment:
Q  56 tatataagaatcttaatctttaactagaatttcaaattatgattcttcattgtgatttcgcttagaaatatcgaat 131  Q
    |||| |||||| |||||| |||||||||||| ||| ||||||||| |||||   |||||||||||||| |||||||    
T  8400190 tatagaagaatgttaatccttaactagaattccaatttatgattcctcattacaatttcgcttagaaacatcgaat 8400265  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 20510741 - 20510690
Alignment:
Q  56 tatataagaatcttaatctttaactagaatttcaaattatgattcttcattg 107  Q
    |||| ||||||||||||||||||||||||||  || ||||||||||||||||    
T  20510741 tatagaagaatcttaatctttaactagaattcaaatttatgattcttcattg 20510690  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 14633327 - 14633395
Alignment:
Q  63 gaatcttaatctttaactagaatttcaaattatgattcttcattgtgatttcgcttagaaatatcgaat 131  Q
    |||||||||| ||||||||||||| ||| ||||||| ||||||||  ||||| ||| ||||||| ||||    
T  14633327 gaatcttaatatttaactagaattccaatttatgatacttcattgcaatttccctttgaaatatagaat 14633395  T

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Target: scaffold0057 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 127
Target Start/End: Original strand, 64664 - 64735
Alignment:
Q  56 tatataagaatcttaatctttaactagaatttcaaattatgattcttcattgtgatttcgcttagaaatatc 127  Q
    |||| ||||||| ||||| |||| ||||||||||  ||||||||| ||||||  ||||||||||| ||||||    
T  64664 tatagaagaatcgtaatccttaaatagaatttcagtttatgattcctcattgcaatttcgcttaggaatatc 64735  T

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