View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_low_80 (Length: 277)

Name: NF2729_low_80
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_low_80
NF2729_low_80
[»] chr8 (5 HSPs)
chr8 (1-277)||(15558858-15559129)
chr8 (116-196)||(15559434-15559514)
chr8 (203-268)||(27973610-27973676)
chr8 (203-268)||(28030879-28030945)
chr8 (210-265)||(27868256-27868312)
[»] chr6 (1 HSPs)
chr6 (203-270)||(34703718-34703785)
[»] chr2 (1 HSPs)
chr2 (203-270)||(27001676-27001743)
[»] chr1 (3 HSPs)
chr1 (203-277)||(34814025-34814100)
chr1 (203-277)||(4466079-4466154)
chr1 (206-266)||(3718778-3718839)
[»] chr3 (1 HSPs)
chr3 (193-235)||(46627844-46627886)


Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 15558858 - 15559129
Alignment:
Q  1 tgtaaactcggtgtcgtactcgaggcaaaagaaataaaagacaagaagaagnnnnnnnnnnnngagttaaggaaatcaggaattcgacacttctagtcat 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||              ||||||||||||| |||||| ||||||||||||| |    
T  15558858 tgtaaactcggtgtcgtactcgaggaaaaagaaataaaagacaagaagaacaaaaaaat-----agttaaggaaatcgggaattggacacttctagtcgt 15558952  T
Q  101 cccnnnnnnnnnnnnttgtttcttgcatttatcttgctactaatcaagttgtctcatgttatggcgagcaatcgatgataaagtgtcttcctttttactc 200  Q
    |||            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  15558953 cccaaaaaaaacaaattgtttcttgcatttatcttgctactaatcaagttgtctcatgttatggcaagcaagcgatgataaagtgtcttcctttttactc 15559052  T
Q  201 attccgtcccaatttaagtgagcattttgttcattcatcctttttaagaaaaatgtattagtgaaggagagacaaaa 277  Q
    |||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||||||||||||||    
T  15559053 attccgtcccaatttaagtgagcattttgttcattcacatttattaagaaaaatgtattagtgaaggagagacaaaa 15559129  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 15559434 - 15559514
Alignment:
Q  116 ttgtttcttgcatttatcttgctactaatcaagttgtctcatgttatggcgagcaatcgatgataaagtgtcttccttttt 196  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  15559434 ttgtttcttgcatttatctcgctactaatcaagttgtctcatgttatggcaagcaaccgatgataaagtgtcgtccttttt 15559514  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 27973610 - 27973676
Alignment:
Q  203 tccgtcccaatttaagtgagcattttgttca-ttcatcctttttaagaaaaatgtattagtgaagga 268  Q
    ||||||||||||||||||||||||||| ||| ||||  ||| |||||||||||||||||||||||||    
T  27973610 tccgtcccaatttaagtgagcattttgctcatttcacacttattaagaaaaatgtattagtgaagga 27973676  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 28030879 - 28030945
Alignment:
Q  203 tccgtcccaatttaagtgagcattttgttca-ttcatcctttttaagaaaaatgtattagtgaagga 268  Q
    ||||||||||||||||||||||||||| ||| ||||  ||| |||||||||||||||||||||||||    
T  28030879 tccgtcccaatttaagtgagcattttgctcatttcacacttattaagaaaaatgtattagtgaagga 28030945  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 265
Target Start/End: Original strand, 27868256 - 27868312
Alignment:
Q  210 caatttaagtgagcattttgttcatt-catcctttttaagaaaaatgtattagtgaa 265  Q
    ||||||||||||| |||||| ||||| ||  ||| ||||||||||||||||||||||    
T  27868256 caatttaagtgagtattttgctcatttcacacttattaagaaaaatgtattagtgaa 27868312  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 34703785 - 34703718
Alignment:
Q  203 tccgtcccaatttaagtgagcattttgttcattcatcctttttaagaaaaatgtattagtgaaggaga 270  Q
    |||||||||||||||||||||||||||||||||   |  | |||||||||||||||| ||||||||||    
T  34703785 tccgtcccaatttaagtgagcattttgttcatttcacactattaagaaaaatgtattggtgaaggaga 34703718  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 270
Target Start/End: Complemental strand, 27001743 - 27001676
Alignment:
Q  203 tccgtcccaatttaagtgagcattttgttcattcatcctttttaagaaaaatgtattagtgaaggaga 270  Q
    |||||||||||||||||||||||||||||||||   |  | |||||||||||||||| ||||||||||    
T  27001743 tccgtcccaatttaagtgagcattttgttcatttcacactattaagaaaaatgtattggtgaaggaga 27001676  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 34814100 - 34814025
Alignment:
Q  203 tccgtcccaatttaagtgagcattttgttcatt-catcctttttaagaaaaatgtattagtgaaggagagacaaaa 277  Q
    |||||||||||||||||||   ||||| ||||| ||  ||| ||||||||||||||||||||||||||||| ||||    
T  34814100 tccgtcccaatttaagtgaattttttgctcatttcacacttattaagaaaaatgtattagtgaaggagagagaaaa 34814025  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 277
Target Start/End: Original strand, 4466079 - 4466154
Alignment:
Q  203 tccgtcccaatttaagtgagcattttgttcatt-catcctttttaagaaaaatgtattagtgaaggagagacaaaa 277  Q
    ||||||||||||||| |||||  |||||||||| ||  ||| ||||||||||| |||||||||| |||||| ||||    
T  4466079 tccgtcccaatttaattgagccatttgttcatttcacacttattaagaaaaatatattagtgaatgagagagaaaa 4466154  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 3718778 - 3718839
Alignment:
Q  206 gtcccaatttaagtgagcattttgttca-ttcatcctttttaagaaaaatgtattagtgaag 266  Q
    |||||||||||||||| ||||||| ||| ||||  ||| ||||||||||||||||| |||||    
T  3718778 gtcccaatttaagtgaacattttgctcatttcacacttattaagaaaaatgtattaatgaag 3718839  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 46627844 - 46627886
Alignment:
Q  193 ttttactcattccgtcccaatttaagtgagcattttgttcatt 235  Q
    ||||||||  ||||||||||||||||||||| |||||||||||    
T  46627844 ttttactctctccgtcccaatttaagtgagccttttgttcatt 46627886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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