View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_85 (Length: 258)
Name: NF2729_low_85
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_85 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 258
Target Start/End: Complemental strand, 743781 - 743528
Alignment:
| Q |
5 |
aaaggtacttaactctctggtgatgcttgtttttcttctaattggagacactgttaatatgtattgatcaccagaaaataaaactgagtattgtcacatg |
104 |
Q |
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| T |
743781 |
aaaggtacgtaacactcttgttatgcttgtttttcttcaaattgtattaccgcttattatgtaattatcaccatcacataaaactgagtattgacacatg |
743682 |
T |
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| Q |
105 |
ctattagttaagtaggggttccttnnnnnnntatagttaagtagggtttccttaaaacaaattaaagatagttaagtagggttttcaccggattaatatt |
204 |
Q |
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| T |
743681 |
ctattagttaagtagggtttccttaaaaaaatatagttaagtagggtttccttaaaacaaattaaagatagttaagtagggttttcaccggattaatatt |
743582 |
T |
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| Q |
205 |
taggcatatttagtttgtgtttttaagttcacaaatattatatatatgattatc |
258 |
Q |
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| T |
743581 |
taggcatatttagtttgtgtttttaagttcacaaatattatatatatgattatc |
743528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 208
Target Start/End: Complemental strand, 42450941 - 42450875
Alignment:
| Q |
137 |
atagttaagtagggtttccttaaaacaaattaaagatagttaagtagggttttcaccggattaatatttagg |
208 |
Q |
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| T |
42450941 |
atagttaagtagggtttccttaaaacaaa-----gatagttaagtagggttttcatcggattaatatttagg |
42450875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 42450972 - 42450925
Alignment:
| Q |
136 |
tatagttaagtagggtttccttaaaacaaattaaagatagttaagtagggttt |
188 |
Q |
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| T |
42450972 |
tatagttaaatagggtttccttaaaac-----aaagatagttaagtagggttt |
42450925 |
T |
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