View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_87 (Length: 253)
Name: NF2729_low_87
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_87 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 25 - 253
Target Start/End: Original strand, 36256994 - 36257220
Alignment:
| Q |
25 |
ggatcaaattctaaagggttattgatgtcgtattattaggggcatatacgaaagcatgatgctagtttagctaaataatgcctcnnnnnnnnnnnttact |
124 |
Q |
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| T |
36256994 |
ggatcaaattctaaagggttattgatgtcgtattattaggggcatatacgaaagcatgatgctagtttagctaaataatgcctcaaaaaaaaa--ttact |
36257091 |
T |
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| Q |
125 |
ttagctaaattaattagtgagttatttttcttactcaaattaattattgaagttaaaagatggttgttgtgacttgtgatctttctaaggctaacgtttt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36257092 |
ttagctaaattaattagtgagttatttttcttactcaaattaattattgaagttaaaagatggttgttgtgacttgtgatctttctaaggctaacgtttt |
36257191 |
T |
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| Q |
225 |
tacccgacaaagtatggtggaggtccatt |
253 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
36257192 |
tacccgacaaagtatggtggaggtccatt |
36257220 |
T |
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