View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2729_low_92 (Length: 247)
Name: NF2729_low_92
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2729_low_92 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 247
Target Start/End: Original strand, 2621200 - 2621428
Alignment:
| Q |
19 |
caaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcacg |
118 |
Q |
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| T |
2621200 |
caaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcacg |
2621299 |
T |
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| Q |
119 |
ggcttctctacagaaagtgacctcgacgagcttcttactaatatatccactttccctgtagacatcaaatcgcttactttcttccattgctatagcaata |
218 |
Q |
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| T |
2621300 |
ggcttctctacagaaagtgacctcgacgagcttcttactaatatatccactttccctgtagacatcaaatcgcttactttcttccattgctatagcaata |
2621399 |
T |
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| Q |
219 |
ttcctacagatgggttgcgagctttctcc |
247 |
Q |
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| T |
2621400 |
ttcctacagatgggttgcgagctttctcc |
2621428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 5102162 - 5102224
Alignment:
| Q |
55 |
aaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcac |
117 |
Q |
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| T |
5102162 |
aaccatccctttcattcctctccttttcgaaaggttccctaacgtcacatcactcaacatcac |
5102224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 2382562 - 2382623
Alignment:
| Q |
56 |
accatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcac |
117 |
Q |
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| T |
2382562 |
accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcac |
2382623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 2486204 - 2486145
Alignment:
| Q |
130 |
agaaagtgacctcgacgagcttcttactaatatatccactttccctgtagacatcaaatc |
189 |
Q |
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| T |
2486204 |
agaaagtgacctcggcgagcttcttacacatatctccactttccctttggacctcaaatc |
2486145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 2367715 - 2367805
Alignment:
| Q |
19 |
caaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctc |
109 |
Q |
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| T |
2367715 |
caaccgtctccgattctccatagcaatgtccgataaaacaatccctttcctttatcgccttttccaaaggttccccaacctcacatccctc |
2367805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 2486327 - 2486229
Alignment:
| Q |
19 |
caaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctcaacatcac |
117 |
Q |
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| T |
2486327 |
caaccgtctccgattctcggtcacaatctccgagaaaacaatccctttccttcatcgtctcttttatgggttccctaatgttacatcccacaatatcac |
2486229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 5106388 - 5106428
Alignment:
| Q |
54 |
aaaccatccctttcattcctcgcctcttcgacaggttccct |
94 |
Q |
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| T |
5106388 |
aaaccatccctttcattcatcgcctcttcaaaaggttccct |
5106428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 2576455 - 2576512
Alignment:
| Q |
39 |
tcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaa |
96 |
Q |
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| T |
2576455 |
tcacaatcaccgattgaaccatccctttcatttgtcgcctcttcgaaaggatccctaa |
2576512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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