View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2729_low_94 (Length: 243)

Name: NF2729_low_94
Description: NF2729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2729_low_94
NF2729_low_94
[»] chr7 (8 HSPs)
chr7 (102-231)||(4996363-4996492)
chr7 (1-115)||(4997146-4997260)
chr7 (39-92)||(4996421-4996474)
chr7 (43-115)||(33223194-33223266)
chr7 (103-174)||(4997151-4997223)
chr7 (53-91)||(31173709-31173747)
chr7 (121-180)||(48850478-48850537)
chr7 (49-91)||(48850495-48850537)
[»] chr4 (6 HSPs)
chr4 (49-115)||(53687716-53687782)
chr4 (32-113)||(9041869-9041950)
chr4 (102-181)||(53687698-53687778)
chr4 (34-113)||(55245971-55246049)
chr4 (121-159)||(55245990-55246028)
chr4 (121-173)||(9041876-9041928)
[»] chr6 (10 HSPs)
chr6 (106-181)||(4221594-4221669)
chr6 (42-115)||(19802540-19802613)
chr6 (102-160)||(19802550-19802609)
chr6 (53-115)||(4222773-4222834)
chr6 (121-178)||(1634940-1634997)
chr6 (103-159)||(4222778-4222834)
chr6 (39-93)||(1634938-1634992)
chr6 (49-93)||(19803247-19803291)
chr6 (53-92)||(4221616-4221655)
chr6 (121-174)||(19803249-19803302)
[»] chr8 (4 HSPs)
chr8 (32-115)||(44007545-44007628)
chr8 (97-180)||(44006380-44006464)
chr8 (49-114)||(44006397-44006462)
chr8 (120-160)||(44007568-44007608)
[»] chr1 (3 HSPs)
chr1 (34-93)||(31868333-31868392)
chr1 (121-179)||(31868332-31868390)
chr1 (42-91)||(37560773-37560822)
[»] chr3 (7 HSPs)
chr3 (39-112)||(22238583-22238656)
chr3 (34-115)||(45244077-45244158)
chr3 (49-93)||(22239254-22239298)
chr3 (30-94)||(45243097-45243161)
chr3 (65-115)||(49275351-49275401)
chr3 (63-115)||(11267735-11267787)
chr3 (121-169)||(22239256-22239304)
[»] chr2 (2 HSPs)
chr2 (49-83)||(40658317-40658351)
chr2 (96-148)||(22424797-22424849)
[»] scaffold0272 (2 HSPs)
scaffold0272 (96-173)||(8895-8972)
scaffold0272 (38-114)||(8894-8969)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 102 - 231
Target Start/End: Complemental strand, 4996492 - 4996363
Alignment:
Q  102 tagttaactaccgtcggaataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttcttgttatttttgtctattgtttt 201  Q
    ||||||||||||| | || |||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  4996492 tagttaactaccgccagagtaaaaacgtcattttcatgtgtcaatatgacgttttgaatgtcagaaaagcaatcttcttgttatttttgtctattgtttt 4996393  T
Q  202 atgtttttgtagagatctattgtaaatatt 231  Q
    ||||||||||||||||||||||||||||||    
T  4996392 atgtttttgtagagatctattgtaaatatt 4996363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 4997260 - 4997146
Alignment:
Q  1 ttcacaatgttaggcatatgctaattgttatttgaaagttgctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacctacagcg 100  Q
    ||||||||||| | |||| |||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||  ||||||||||||||||| | |||    
T  4997260 ttcacaatgttggacatacgctaattgttatttgaaaattgcttttttgacattcaaaacttcatattgacacatggaaatgacgtttttacctccggcg 4997161  T
Q  101 atagttaactaccgt 115  Q
     ||||||||| ||||    
T  4997160 gtagttaactgccgt 4997146  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 4996421 - 4996474
Alignment:
Q  39 ttgctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttac 92  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||||||||||||    
T  4996421 ttgcttttctgacattcaaaacgtcatattgacacatgaaaatgacgtttttac 4996474  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 115
Target Start/End: Complemental strand, 33223266 - 33223194
Alignment:
Q  43 tttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacctacagcgatagttaactaccgt 115  Q
    ||||| |||||||||||||||||||||||||||| ||||||| |||| |||| |  || ||||||||||||||    
T  33223266 ttttttgacattcaaaacgtcatattgacacatagaaatgacattttaacctccgacggtagttaactaccgt 33223194  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 4997151 - 4997223
Alignment:
Q  103 agttaactaccgtcggaa-taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaat 174  Q
    |||||||||||| ||||  |||||||||||||| ||||||||||||||| ||||||||| | | |||||||||    
T  4997151 agttaactaccgccggaggtaaaaacgtcatttccatgtgtcaatatgaagttttgaatgtcaaaaaagcaat 4997223  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 91
Target Start/End: Complemental strand, 31173747 - 31173709
Alignment:
Q  53 ttcaaaacgtcatattgacacataaaaatgacgttttta 91  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  31173747 ttcaaaacgtcatattgacatataaaaatgacgttttta 31173709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 48850537 - 48850478
Alignment:
Q  121 taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttctt 180  Q
    |||||| ||||||||||||||||||||| | ||||||||| | ||||| ||||| |||||    
T  48850537 taaaaatgtcattttcatgtgtcaatataacgttttgaatgtcagaaatgcaattttctt 48850478  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 48850495 - 48850537
Alignment:
Q  49 gacattcaaaacgtcatattgacacataaaaatgacgttttta 91  Q
    |||||||||||||| |||||||||||| |||||||| ||||||    
T  48850495 gacattcaaaacgttatattgacacatgaaaatgacattttta 48850537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 115
Target Start/End: Original strand, 53687716 - 53687782
Alignment:
Q  49 gacattcaaaacgtcatattgacacataaaaatgacgtttttacctacagcgatagttaactaccgt 115  Q
    |||||||||||||||||||||||||||||||||||| |||||| || ||||| ||||||||||||||    
T  53687716 gacattcaaaacgtcatattgacacataaaaatgacatttttatctccagcggtagttaactaccgt 53687782  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 9041869 - 9041950
Alignment:
Q  32 ttgaaagttgctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacctacagcgatagttaactacc 113  Q
    |||||| ||||||||  |||||||||||||||||||||| ||||  |||||||||||||||||   ||| ||||||||||||    
T  9041869 ttgaaatttgcttttatgacattcaaaacgtcatattgatacatggaaatgacgtttttacctcgggcggtagttaactacc 9041950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 181
Target Start/End: Complemental strand, 53687778 - 53687698
Alignment:
Q  102 tagttaactaccgtcgga-ataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttcttg 181  Q
    |||||||||||||  ||| ||||||| |||||||| |||||||||||||| ||||||||| | ||||||| ||| ||||||    
T  53687778 tagttaactaccgctggagataaaaatgtcatttttatgtgtcaatatgacgttttgaatgtcagaaaagtaattttcttg 53687698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 113
Target Start/End: Original strand, 55245971 - 55246049
Alignment:
Q  34 gaaagttgctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacctacagcgatagttaactacc 113  Q
    |||| ||| ||||| ||| |||||||||||||||||||||||  |||||||||||||| || ||| | ||||||||||||    
T  55245971 gaaaattgtttttttgacgttcaaaacgtcatattgacacatggaaatgacgttttta-cttcagtggtagttaactacc 55246049  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 159
Target Start/End: Complemental strand, 55246028 - 55245990
Alignment:
Q  121 taaaaacgtcattttcatgtgtcaatatgatgttttgaa 159  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  55246028 taaaaacgtcatttccatgtgtcaatatgacgttttgaa 55245990  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 9041928 - 9041876
Alignment:
Q  121 taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaa 173  Q
    |||||||||||||| ||||| ||||||||| ||||||||| | | ||||||||    
T  9041928 taaaaacgtcatttccatgtatcaatatgacgttttgaatgtcataaaagcaa 9041876  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 4221669 - 4221594
Alignment:
Q  106 taactaccgtcggaataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttcttg 181  Q
    |||||||||  ||| ||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||||||    
T  4221669 taactaccgctggagtaaaaacgtcattttcatgtgtcaatatgacattttgaaggttagaaaagcaatcttcttg 4221594  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 19802540 - 19802613
Alignment:
Q  42 ctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacctacagcgatagttaactaccgt 115  Q
    |||||| |||||||||||| |||||||||||||| ||||||| |||||||||| | ||| ||||||||||||||    
T  19802540 cttttttgacattcaaaacatcatattgacacatgaaaatgatgtttttacctccggcggtagttaactaccgt 19802613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 19802609 - 19802550
Alignment:
Q  102 tagttaactaccgtcggaa-taaaaacgtcattttcatgtgtcaatatgatgttttgaat 160  Q
    ||||||||||||| ||||  ||||||| ||||||||||||||||||||||||||||||||    
T  19802609 tagttaactaccgccggaggtaaaaacatcattttcatgtgtcaatatgatgttttgaat 19802550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 4222834 - 4222773
Alignment:
Q  53 ttcaaaacgtcatattgacacataaaaatgacgtttttacctacagcgatagttaactaccgt 115  Q
    ||||||||||||||||||||||| |||||||||||||||||  ||||| ||||||||| ||||    
T  4222834 ttcaaaacgtcatattgacacatgaaaatgacgtttttacc-ccagcggtagttaactgccgt 4222773  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 1634940 - 1634997
Alignment:
Q  121 taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttc 178  Q
    |||||||||||||| ||||||||||||| | ||||||||| | |||||||||||||||    
T  1634940 taaaaacgtcatttccatgtgtcaatataacgttttgaatgtcagaaaagcaatcttc 1634997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 4222778 - 4222834
Alignment:
Q  103 agttaactaccgtcggaataaaaacgtcattttcatgtgtcaatatgatgttttgaa 159  Q
    ||||||||||||  ||  |||||||||||||||||||||||||||||| ||||||||    
T  4222778 agttaactaccgctggggtaaaaacgtcattttcatgtgtcaatatgacgttttgaa 4222834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 1634992 - 1634938
Alignment:
Q  39 ttgctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacc 93  Q
    ||||||||  |||||||||||||| ||||||||||||  ||||||||||||||||    
T  1634992 ttgcttttctgacattcaaaacgttatattgacacatggaaatgacgtttttacc 1634938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 19803291 - 19803247
Alignment:
Q  49 gacattcaaaacgtcatattgacacataaaaatgacgtttttacc 93  Q
    |||||||||||||| |||||||||||| |||||||| ||||||||    
T  19803291 gacattcaaaacgtaatattgacacatgaaaatgacttttttacc 19803247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 4221616 - 4221655
Alignment:
Q  53 ttcaaaacgtcatattgacacataaaaatgacgtttttac 92  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  4221616 ttcaaaatgtcatattgacacatgaaaatgacgtttttac 4221655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 19803249 - 19803302
Alignment:
Q  121 taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaat 174  Q
    |||||| ||||||||||||||||||||| | ||||||||| | |||| ||||||    
T  19803249 taaaaaagtcattttcatgtgtcaatattacgttttgaatgtcagaagagcaat 19803302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 44007628 - 44007545
Alignment:
Q  32 ttgaaagttgctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacctacagcgatagttaactaccgt 115  Q
    |||||| ||| ||||| |||||||||||| ||||||||||| ||| |||||||||||||| |  ||||| ||||||||||||||    
T  44007628 ttgaaaattgtttttttgacattcaaaacatcatattgacatatagaaatgacgtttttatcctcagcggtagttaactaccgt 44007545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 44006464 - 44006380
Alignment:
Q  97 agcgatagttaactaccgtcgga-ataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttctt 180  Q
    |||| ||||||||||||| || | ||||||||||||||||||| ||||||||||| ||||||||| | ||| ||| |||||||||    
T  44006464 agcggtagttaactaccgccgaagataaaaacgtcattttcatatgtcaatatgaagttttgaatgtcagagaagtaatcttctt 44006380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 44006397 - 44006462
Alignment:
Q  49 gacattcaaaacgtcatattgacacataaaaatgacgtttttacctacagcgatagttaactaccg 114  Q
    |||||||||||| ||||||||||| || ||||||||||||||| || | ||| |||||||||||||    
T  44006397 gacattcaaaacttcatattgacatatgaaaatgacgtttttatcttcggcggtagttaactaccg 44006462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 44007568 - 44007608
Alignment:
Q  120 ataaaaacgtcattttcatgtgtcaatatgatgttttgaat 160  Q
    |||||||||||||||  || |||||||||||||||||||||    
T  44007568 ataaaaacgtcatttctatatgtcaatatgatgttttgaat 44007608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 31868333 - 31868392
Alignment:
Q  34 gaaagttgctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacc 93  Q
    |||| ||||||||| || |||||||||||||| ||||||||| |||||||||||||||||    
T  31868333 gaaaattgcttttttgatattcaaaacgtcatgttgacacatgaaaatgacgtttttacc 31868392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 31868390 - 31868332
Alignment:
Q  121 taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaatcttct 179  Q
    ||||||||||||||||||||||||| |||| ||||||||||| | ||||||||| ||||    
T  31868390 taaaaacgtcattttcatgtgtcaacatgacgttttgaatatcaaaaaagcaattttct 31868332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 37560822 - 37560773
Alignment:
Q  42 ctttttagacattcaaaacgtcatattgacacataaaaatgacgttttta 91  Q
    |||||| |||||||||||||||||||||||| ||  ||||||| ||||||    
T  37560822 cttttttgacattcaaaacgtcatattgacatattgaaatgacattttta 37560773  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 22238583 - 22238656
Alignment:
Q  39 ttgctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacctacagcgatagttaactac 112  Q
    ||||||||| |||||| | ||||||||||||||  || |||||||||||||||||| | | |||||||||||||    
T  22238583 ttgcttttttgacatttagaacgtcatattgacttatgaaaatgacgtttttaccttcggtgatagttaactac 22238656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 45244158 - 45244077
Alignment:
Q  34 gaaagttgctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacctacagcgatagttaactaccgt 115  Q
    |||| ||| |||||||||||||||||| |||||||||||| |  ||||||| |||||||   ||||| | ||||||||||||    
T  45244158 gaaaattggtttttagacattcaaaacttcatattgacacttgtaaatgacatttttactctcagcggtggttaactaccgt 45244077  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 22239298 - 22239254
Alignment:
Q  49 gacattcaaaacgtcatattgacacataaaaatgacgtttttacc 93  Q
    ||||||||||| ||||||||||||||| |||||||| ||||||||    
T  22239298 gacattcaaaatgtcatattgacacatgaaaatgacatttttacc 22239254  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 45243097 - 45243161
Alignment:
Q  30 atttgaaagttgctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacct 94  Q
    |||||||||||||||||| |||||||||||  || |||||||||||  ||||||  |||||||||    
T  45243097 atttgaaagttgcttttttgacattcaaaatttcttattgacacatgtaaatgatatttttacct 45243161  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 49275401 - 49275351
Alignment:
Q  65 tattgacacataaaaatgacgtttttacctacagcgatagttaactaccgt 115  Q
    |||||||||| | ||||||||||||||||| || ||| |||||||||||||    
T  49275401 tattgacacaaataaatgacgtttttacctccaacgacagttaactaccgt 49275351  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 11267735 - 11267787
Alignment:
Q  63 catattgacacataaaaatgacgtttttacctacagcgatagttaactaccgt 115  Q
    |||||||||||||| ||||||  ||||||||| ||| ||||||||||| ||||    
T  11267735 catattgacacatagaaatgatatttttacctccagagatagttaactgccgt 11267787  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 22239256 - 22239304
Alignment:
Q  121 taaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaa 169  Q
    |||||| |||||||||||||||||||||||  |||||||| | ||||||    
T  22239256 taaaaatgtcattttcatgtgtcaatatgacattttgaatgtcagaaaa 22239304  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 40658351 - 40658317
Alignment:
Q  49 gacattcaaaacgtcatattgacacataaaaatga 83  Q
    |||||||||||||||||||||||||||||||||||    
T  40658351 gacattcaaaacgtcatattgacacataaaaatga 40658317  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 22424849 - 22424797
Alignment:
Q  96 cagcgatagttaactaccgtcggaataaaaacgtcattttcatgtgtcaatat 148  Q
    ||||| |||||||||||||  ||| |||||| || ||||||||||||||||||    
T  22424849 cagcggtagttaactaccgctggagtaaaaatgttattttcatgtgtcaatat 22424797  T

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Target: scaffold0272 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 173
Target Start/End: Complemental strand, 8972 - 8895
Alignment:
Q  96 cagcgatagttaactaccgtcggaataaaaacgtcattttcatgtgtcaatatgatgttttgaatattagaaaagcaa 173  Q
    ||||| |||||||||||||| ||| ||||||||||||||  || ||||| ||||| |||||| || ||| ||||||||    
T  8972 cagcggtagttaactaccgttggagtaaaaacgtcatttctatatgtcattatgaagttttgtatgttaaaaaagcaa 8895  T

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Target: scaffold0272; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 8894 - 8969
Alignment:
Q  38 gttgctttttagacattcaaaacgtcatattgacacataaaaatgacgtttttacctacagcgatagttaactaccg 114  Q
    ||||||||||  |||| |||||| ||||| ||||| ||| |||||||||||||| || || || |||||||||||||    
T  8894 gttgcttttttaacatacaaaacttcataatgacatatagaaatgacgttttta-ctccaacggtagttaactaccg 8969  T

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