View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2730_high_1 (Length: 594)
Name: NF2730_high_1
Description: NF2730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2730_high_1 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Original strand, 12945561 - 12946153
Alignment:
| Q |
1 |
aggaatttgagcagctagtggagaagcagagatggtggaaaatgagcgaggaagggtggtagaggatgaaaccaccaccatggaagtagagaataatggg |
100 |
Q |
| |
|
||||||||||||||||| || ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12945561 |
aggaatttgagcagctaatgtaga-gcaggggtggtggaaaatgagcgaggaagggtggtagaggatgaaaccaccaccatggaagtagagaataatggg |
12945659 |
T |
|
| Q |
101 |
gagtttggcagcagaggaagacggtggagggttcgggaggaagagacgaatggaggttttcgcagcggcgtttaagggaatgtccttagagagagccggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12945660 |
gagtttggcagcagaggaagacggtggagggttcgggaggaagagacgaatggaggttttcgcagcggcgtttaagggaatgtctttagagagagccggt |
12945759 |
T |
|
| Q |
201 |
tgcggtggcgaattagtgggatcggaggatgatggcacggtgggcacaatgtagtttcttgttagtgaaccatcagagttgagtttgattttgaggaatt |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12945760 |
tgcagtggcgaattagtgggatcggaggatgatggcacggtgggcacaatgtagtttcttgttagtgaaccatcagagttgagtttgattttgaggaatt |
12945859 |
T |
|
| Q |
301 |
catagggatccatagtggagttttgtttggaattaggtgaatttggttatgccattgttgttgaaatgagaagagataaaaggttaattcagagtcaatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12945860 |
catagggatccatagtggagttttgtttggaattaggtgaatttggttatgccattgttgttgaaatgagaagagataaaaggttaattcagagtcaatg |
12945959 |
T |
|
| Q |
401 |
atgcaacatggaattgttgtacggttaactactttcagagtggtcctt-aatttctctacgtttggctttcattcatgcttgttaattgtgaccacactt |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12945960 |
atgcaacatggaattgttgtacggttaactactttgagagt-gtccttaaatttctctacgtttggctttcattcatgcttgttaattgtgaccacactt |
12946058 |
T |
|
| Q |
500 |
tggcatagatattttgcacgcagtaatgtgtggtgatattttatttttgacnnnnnnnncttgtgccaatttgtggtgattattaaaggtaatac |
594 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||| |
|
|
| T |
12946059 |
tggcatagatattttgcacgcagtaatgtgtggtgatattttattttcgacaaaacaaacttggggcaatttgtggtgattattaaaggtaatac |
12946153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 217 - 332
Target Start/End: Original strand, 12938092 - 12938207
Alignment:
| Q |
217 |
tgggatcggaggatgatggcacggtgggcacaatgtagtttcttgttagtgaaccatcagagttgagtttgattttgaggaattcatagggatccatagt |
316 |
Q |
| |
|
||||||||||||||| ||||||||| || || ||| ||||||||| || |||||||||| |||||||||||||| |||||||||||||||||| || || |
|
|
| T |
12938092 |
tgggatcggaggatggtggcacggtagggacgttgtcgtttcttgtgagggaaccatcagggttgagtttgatttcgaggaattcatagggatcgatggt |
12938191 |
T |
|
| Q |
317 |
ggagttttgtttggaa |
332 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
12938192 |
ggagtttggtttggaa |
12938207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 12937938 - 12938044
Alignment:
| Q |
51 |
gaagggtggtagaggatgaaaccaccaccatggaagtagagaataatggggagtttggcagcagaggaagacggtggagggttcgggaggaagagacgaa |
150 |
Q |
| |
|
||||| |||||| ||| ||||||||||||||||||||||||||| | ||||| || || || || |||| ||||||||||| |||||||||| || | |
|
|
| T |
12937938 |
gaaggatggtagcggaagaaaccaccaccatggaagtagagaatgagagggagcttagccgcggaagaaggtggtggagggtttgggaggaagatgcgga |
12938037 |
T |
|
| Q |
151 |
tggaggt |
157 |
Q |
| |
|
||||||| |
|
|
| T |
12938038 |
tggaggt |
12938044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University