View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2730_high_10 (Length: 335)
Name: NF2730_high_10
Description: NF2730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2730_high_10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 29999247 - 29998918
Alignment:
| Q |
7 |
acatcatcagaggtcaagacataactatactagacaaatataatatattttatgttgaaaattaaaaagagtattttgatatcttcgatagtatatattt |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29999247 |
acatcaacagaggtcaagacataactatactaaacaaatataatattgtttatgttgaaaattaaaaagagtattttgatatctttgatagtatatattt |
29999148 |
T |
|
| Q |
107 |
tgggcaaaaagtcacttgagttagtgatggacaagaatttcannnnnnngttgagtctcttgttacttgttctgttttgtttcatgaccagtttctaagt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
29999147 |
tgggcaaaaagtcacttgagttagtgatggacaagaatttcatttttttgtcgagtctcttgttacttgttctgtttaatctcatgaccagtttctaagt |
29999048 |
T |
|
| Q |
207 |
caaattggatac-nnnnnnngttactaagtccaatccttatttttaacgtgtacataagctcaatatcatacaatgtcacatgccatccaaaaatgaaaa |
305 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29999047 |
caaattggatacaaaaaaaagttattaagtccaatccttatttttaacgtgtacataagctcaatatcatacaatgtcacatgccatccaaaaatgaaaa |
29998948 |
T |
|
| Q |
306 |
cacttatgctcgatgttccaatgatggttc |
335 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
29998947 |
cacttaagctcgatgttccaatgatggttc |
29998918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 39772099 - 39772029
Alignment:
| Q |
48 |
aatatattttatgttgaaaattaaaaagagtattttgatatcttcgatagtatatattttgggcaaaaagt |
118 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||||||| ||| || |||||| ||||| | || |||||||| |
|
|
| T |
39772099 |
aatatattttatgttggaaaataaaaagggtattttggtatttttgatagtctatatgtcggacaaaaagt |
39772029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 98
Target Start/End: Complemental strand, 25434327 - 25434275
Alignment:
| Q |
46 |
ataatatattttatgttgaaaattaaaaagagtattttgatatcttcgatagt |
98 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||||| || |||||| |
|
|
| T |
25434327 |
ataatatattttatgttaaaaaaataaaagagtattttgatatttttgatagt |
25434275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 42250216 - 42250260
Alignment:
| Q |
54 |
ttttatgttgaaaattaaaaagagtattttgatatcttcgatagt |
98 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
42250216 |
ttttatgttggaaaataaaaagggtattttgatatattcgatagt |
42250260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University