View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2730_high_16 (Length: 328)

Name: NF2730_high_16
Description: NF2730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2730_high_16
NF2730_high_16
[»] chr2 (2 HSPs)
chr2 (49-318)||(25290601-25290871)
chr2 (104-192)||(19251002-19251089)
[»] chr3 (3 HSPs)
chr3 (85-192)||(9443534-9443641)
chr3 (139-197)||(744434-744492)
chr3 (139-197)||(748364-748422)
[»] chr1 (2 HSPs)
chr1 (1-55)||(14599763-14599817)
chr1 (1-55)||(14608638-14608692)
[»] chr8 (2 HSPs)
chr8 (85-192)||(4282264-4282372)
chr8 (88-166)||(25187880-25187958)
[»] chr4 (1 HSPs)
chr4 (82-208)||(19724198-19724324)
[»] chr6 (1 HSPs)
chr6 (85-192)||(7859337-7859443)
[»] chr5 (2 HSPs)
chr5 (101-192)||(15063000-15063091)
chr5 (85-192)||(28800958-28801065)


Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 49 - 318
Target Start/End: Original strand, 25290601 - 25290871
Alignment:
Q  49 ttcaataatggtgtgatggatatagatattttcattgagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgt 148  Q
    ||||||||||||||| || || ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25290601 ttcaataatggtgtggtgaatgtagatattttcattgagaagatcaagattctagcttggtattggagtatgagtaagttaaaaatcggctcgtgtttgt 25290700  T
Q  149 attatgagtggagttggaaccctcgggagtgcttacttagatagtttttccggtg-tttttacctttggagctgttattataagactgctgtgttgtctt 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  25290701 attatgagtggagttggaaccctcgggagtgcttacttagatagtttttccggtgttttttacctttggagctgttattataagactgttgtgttgtctt 25290800  T
Q  248 tcagtgctgctgttttttctgtttttggctgcgttatgctcctgacagttttgctagtggtgcggtctgtg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25290801 tcagtgctgctgttttttctgtttttggctgcgttatgctcctgacagttttgctagtggtgcggtctgtg 25290871  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 192
Target Start/End: Complemental strand, 19251089 - 19251002
Alignment:
Q  104 cttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag 192  Q
    |||||| || ||||||||||||||| |||| |  |  ||||||||||||| ||||| ||| |||||||||| | |||||||||||||||    
T  19251089 cttggttttggagtatgagtaagttgaaaa-catcatgtgtttgtattataagtggtgttagaaccctcggtaatgcttacttagatag 19251002  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 192
Target Start/End: Complemental strand, 9443641 - 9443534
Alignment:
Q  85 gagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttac 184  Q
    |||||||||||| | ||||||||||||| ||||||||||||| ||||||| |   |||| |||| |||||||||| ||||||||||||||||||||||||    
T  9443641 gagaatatcaaggtcctagcttggtattggagtatgagtaagctaaaaatagcgacgtgcttgtcttatgagtggtgttggaaccctcgggagtgcttac 9443542  T
Q  185 ttagatag 192  Q
    || |||||    
T  9443541 ttcgatag 9443534  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 744492 - 744434
Alignment:
Q  139 tcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagttttt 197  Q
    |||||||||||||| |||||| ||||||||||||| || | |||| |||||||| ||||    
T  744492 tcgtgtttgtattacgagtggtgttggaaccctcgagaatacttaattagatagctttt 744434  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 748422 - 748364
Alignment:
Q  139 tcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatagttttt 197  Q
    |||||||||||||| |||||| ||||||||||||| || | |||| |||||||| ||||    
T  748422 tcgtgtttgtattacgagtggtgttggaaccctcgagaatacttaattagataggtttt 748364  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14599817 - 14599763
Alignment:
Q  1 atgaaagctgaagaacaatatgtttccaattctttatttaccggaggattcaata 55  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14599817 atgaaagctgaagaacaatatgtttccaattctttatttaccggaggattcaata 14599763  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14608638 - 14608692
Alignment:
Q  1 atgaaagctgaagaacaatatgtttccaattctttatttaccggaggattcaata 55  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14608638 atgaaagctgaagaacaatatgtttccaattctttgtttaccggaggattcaata 14608692  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 4282264 - 4282372
Alignment:
Q  85 gagaatatcaagattctagcttggtattagagtatgagtaagtt-aaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgctta 183  Q
    |||||||| ||| ||||||||||||||| ||||||||||||| | |||||| |   | |||||||||||||||||| |||||||||||||||| || |||    
T  4282264 gagaatataaaggttctagcttggtattggagtatgagtaagctgaaaaatagcgacatgtttgtattatgagtggtgttggaaccctcgggattgttta 4282363  T
Q  184 cttagatag 192  Q
    || ||||||    
T  4282364 ctaagatag 4282372  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 25187958 - 25187880
Alignment:
Q  88 aatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttgga 166  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||| |  | ||| ||||||||||||||| ||||||    
T  25187958 aatatcaagatgttagcttggtattggagtatgagtaagttaaaaatagcattgtgcttgtattatgagtggtgttgga 25187880  T

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Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 208
Target Start/End: Complemental strand, 19724324 - 19724198
Alignment:
Q  82 attgagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgct 181  Q
    ||||||||||||||| |  |||||||||||| |||||||||||    |||||| |  || ||||||||||| |||| | |||||||||||| |||||| |    
T  19724324 attgagaatatcaaggtgttagcttggtattggagtatgagtagacaaaaaatggtatcatgtttgtattaagagttgtgttggaaccctcaggagtgtt 19724225  T
Q  182 tacttagatagtttttccggtgttttt 208  Q
    ||||||||||||| ||  |||||||||    
T  19724224 tacttagatagttgttatggtgttttt 19724198  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 7859337 - 7859443
Alignment:
Q  85 gagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttac 184  Q
    |||||||||||| |||| |||||||||| ||||||||||||| | | ||| |   |||||||||||||||||||| ||| |||  || |||| || ||||    
T  7859337 gagaatatcaaggttcttgcttggtattggagtatgagtaagctgataatagcgacgtgtttgtattatgagtggtgttcgaattcttgggattg-ttac 7859435  T
Q  185 ttagatag 192  Q
    ||||||||    
T  7859436 ttagatag 7859443  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 101 - 192
Target Start/End: Complemental strand, 15063091 - 15063000
Alignment:
Q  101 tagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttacttagatag 192  Q
    |||||||||||| ||||||||||| |  |||||     |||||||||||||| |||||| ||||||||||||||||| |  |||||||||||    
T  15063091 tagcttggtattggagtatgagtaggcgaaaaacgatatcgtgtttgtattacgagtggcgttggaaccctcgggagcgtctacttagatag 15063000  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 192
Target Start/End: Original strand, 28800958 - 28801065
Alignment:
Q  85 gagaatatcaagattctagcttggtattagagtatgagtaagttaaaaatcggctcgtgtttgtattatgagtggagttggaaccctcgggagtgcttac 184  Q
    |||||||||||| ||||||||||||||| ||||||||| ||  | ||||| |  || |||| ||||||||| ||| |||||||||||  | | || ||||    
T  28800958 gagaatatcaaggttctagcttggtattggagtatgagcaaacttaaaatagcatcatgttcgtattatgattggtgttggaacccttagaattgtttac 28801057  T
Q  185 ttagatag 192  Q
    ||||||||    
T  28801058 ttagatag 28801065  T

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