View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2730_high_17 (Length: 326)

Name: NF2730_high_17
Description: NF2730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2730_high_17
NF2730_high_17
[»] chr7 (4 HSPs)
chr7 (136-320)||(17506970-17507154)
chr7 (136-320)||(17546060-17546244)
chr7 (137-298)||(15645130-15645291)
chr7 (138-201)||(45976480-45976543)
[»] chr8 (3 HSPs)
chr8 (136-320)||(25890957-25891141)
chr8 (268-320)||(18309115-18309167)
chr8 (138-192)||(37718866-37718920)
[»] chr1 (3 HSPs)
chr1 (1-138)||(14599680-14599817)
chr1 (1-135)||(14608638-14608772)
chr1 (224-320)||(39584909-39585005)
[»] chr6 (1 HSPs)
chr6 (137-298)||(7956718-7956879)
[»] chr3 (1 HSPs)
chr3 (137-279)||(14853834-14853976)
[»] chr5 (2 HSPs)
chr5 (235-285)||(32239704-32239754)
chr5 (235-280)||(17674020-17674065)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 136 - 320
Target Start/End: Original strand, 17506970 - 17507154
Alignment:
Q  136 tctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccgattcttcg 235  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |    
T  17506970 tctaaaggtgtcaatatttgcgtggcgactgctccgtgatcgcatacctactaaatctaatctggcatcacgtggtatacttaatgtgaccgattcttgg 17507069  T
Q  236 tgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctgtggtgc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  17507070 tgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctggtgc 17507154  T

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Target: chr7; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 17546244 - 17546060
Alignment:
Q  136 tctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccgattcttcg 235  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |    
T  17546244 tctaaaggtgtcaatatttgcgtggcgactgctccgtgatcgcatacctactaaatctaatctggcatcacgtggtatacttaatgtgaccgattcttgg 17546145  T
Q  236 tgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctgtggtgc 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  17546144 tgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctggtgc 17546060  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 298
Target Start/End: Complemental strand, 15645291 - 15645130
Alignment:
Q  137 ctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccgattcttcgt 236  Q
    |||||||||||| ||||||| ||||| ||||||||||||  ||| ||||||||||||||  ||||||||||||||||  ||||||||  || ||||  ||    
T  15645291 ctaaaggtgtcagtctttgcttggcggctgctccgtgattaccttcctactaaatctaacttggcatcacgtggtataattaatgtggacgcttctatgt 15645192  T
Q  237 gtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgcttt 298  Q
    || |||||||||||||||||||||||||||||  |||||||||| |||| ||||||||||||    
T  15645191 gtgtttcggggtgtggccaggtggaggatgctcatcatttgtttttctcttgtccttgcttt 15645130  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 45976480 - 45976543
Alignment:
Q  138 taaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggc 201  Q
    |||||||||| || ||||| ||||| |||||  |||||||||| ||||||||||||||| ||||    
T  45976480 taaaggtgtctatttttgcttggcggctgctttgtgatcgccttcctactaaatctaatttggc 45976543  T

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Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 136 - 320
Target Start/End: Complemental strand, 25891141 - 25890957
Alignment:
Q  136 tctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccgattcttcg 235  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||| |    
T  25891141 tctaaaggtgtcaatctttgcatggcgactgctccgtgatcgcctacctactaaatctaatttggcatcacgtggtatacttaaagtggccgattctttg 25891042  T
Q  236 tgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctgtggtgc 320  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| ||||| |||||||| ||||||    
T  25891041 tgtatttcggggtgtggccaggtggaggatgctcgtcatttgtttctctcttgttcttgctttggggagctgtggtctctggtgc 25890957  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 268 - 320
Target Start/End: Original strand, 18309115 - 18309167
Alignment:
Q  268 tagtcatttgtttctctcgtgtccttgctttagggagatgtggtctgtggtgc 320  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||| ||||||    
T  18309115 tagtcatttgtttctctcgtgtccttgctttggggagctgtggtctctggtgc 18309167  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 37718920 - 37718866
Alignment:
Q  138 taaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatc 192  Q
    ||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |||||    
T  37718920 taaaggtgtcaatttttgcttggcggctgctccgtgatcgcttacctaccaaatc 37718866  T

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Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 14599817 - 14599680
Alignment:
Q  1 atgaaagctgaagaacaatatgtttccaattctttatttaccggaggattcaatagtataacaagagctcatctaatggacaaggttattgattctgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14599817 atgaaagctgaagaacaatatgtttccaattctttatttaccggaggattcaatagtgtaacaagagctcatctaatggacaaggttattgattctgaag 14599718  T
Q  101 taactcatcctcaaatggcaggggctaaaggatcttct 138  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14599717 taactcatcctcaaatggcaggggctaaaggatcttct 14599680  T

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Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 14608638 - 14608772
Alignment:
Q  1 atgaaagctgaagaacaatatgtttccaattctttatttaccggaggattcaatagtataacaagagctcatctaatggacaaggttattgattctgaag 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |  || ||||||||||| |    
T  14608638 atgaaagctgaagaacaatatgtttccaattctttgtttaccggaggattcaatagtgtaacaagagctcatctaatggatagagtgattgattctgagg 14608737  T
Q  101 taactcatcctcaaatggcaggggctaaaggatct 135  Q
    | |||||||||||||||||||||||||||||||||    
T  14608738 tgactcatcctcaaatggcaggggctaaaggatct 14608772  T

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Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 39585005 - 39584909
Alignment:
Q  224 accgattcttcgtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgctttagggagatgtggtctgtggtgc 320  Q
    |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  39585005 accgattctttgtgtattttggggtgtggccaggtggaggatgctcgtcatttgtttctctcgtgtccttgctttagggagttgtggtctctggtgc 39584909  T

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Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 137 - 298
Target Start/End: Original strand, 7956718 - 7956879
Alignment:
Q  137 ctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccgattcttcgt 236  Q
    |||||||||||| ||||||| |||||  |||||||||||||||| ||||||||||||||  ||||||| ||||||||  ||||||||  || ||||  ||    
T  7956718 ctaaaggtgtcagtctttgcttggcggttgctccgtgatcgccttcctactaaatctaacttggcatctcgtggtataattaatgtggacgcttctatgt 7956817  T
Q  237 gtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctcgtgtccttgcttt 298  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  7956818 gtgtttcggggtgtggccaggtggaggatgctcgtcatttgtttctctcatgtccttgcttt 7956879  T

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Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 14853976 - 14853834
Alignment:
Q  137 ctaaaggtgtcaatctttgcgtggcgactgctccgtgatcgcctacctactaaatctaatatggcatcacgtggtattcttaatgtgaccgattcttcgt 236  Q
    |||||||||||| ||||||| ||||| |||||||||||||| |  ||||||||||||||  ||||||||||||||||  ||||||||   | ||||  ||    
T  14853976 ctaaaggtgtcagtctttgcttggcggctgctccgtgatcgtcctcctactaaatctaacttggcatcacgtggtataattaatgtggatgcttctatgt 14853877  T
Q  237 gtatttcggggtgtggccaggtggaggatgctagtcatttgtt 279  Q
    || ||||||||||||| ||||||||||||||| ||||||||||    
T  14853876 gtgtttcggggtgtggtcaggtggaggatgctcgtcatttgtt 14853834  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 32239754 - 32239704
Alignment:
Q  235 gtgtatttcggggtgtggccaggtggaggatgctagtcatttgtttctctc 285  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  32239754 gtgtgtttcggggtgtggtcaggtggaggatgctcgtcatttgtttctctc 32239704  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 280
Target Start/End: Complemental strand, 17674065 - 17674020
Alignment:
Q  235 gtgtatttcggggtgtggccaggtggaggatgctagtcatttgttt 280  Q
    |||| |||| || ||||||||||||||||||||| |||||||||||    
T  17674065 gtgtgtttctggttgtggccaggtggaggatgctcgtcatttgttt 17674020  T

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