View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2730_high_19 (Length: 312)
Name: NF2730_high_19
Description: NF2730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2730_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 5e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 90 - 283
Target Start/End: Original strand, 10162640 - 10162833
Alignment:
| Q |
90 |
ttggttactgcttcaaatattgagaatgttgttagaaggttgatggagacaacggaaggtgatgagatgcgagagagagcaataaaacttaaaaatgttg |
189 |
Q |
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| T |
10162640 |
ttggttactgcttcaaatattgagaatgttgttagaaggttgatggagacaacggaaggtgatgagatgcgagagagagcaataaaacttaaaaatgttg |
10162739 |
T |
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| Q |
190 |
ttggtacgtcaatggatgaaggtggagtctctcgtatggaaatggattctttcatcgctcatattactagatagttgttgtggtaatgatgatc |
283 |
Q |
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| T |
10162740 |
ttggtacgtcaatggatgaaggtggagtctctcgtattgaaatggattcttttatcgctcatattactagatagttgttgtgtaaatgatgatc |
10162833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 14596838 - 14596925
Alignment:
| Q |
10 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttac |
97 |
Q |
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| T |
14596838 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgcagatccacgaaatgcatctcgcttggttac |
14596925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 271
Target Start/End: Original strand, 10163561 - 10163672
Alignment:
| Q |
160 |
gagagagagcaataaaacttaaaaatgttgttggtacgtcaatggatgaaggtggagtctctcgtatggaaatggattctttcatcgctcatattactag |
259 |
Q |
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| T |
10163561 |
gagagagagagataaaacttaaaaatgttgttagtacgtcaatggatgaaggaggagtttctcgtatggaaatggattctttcattgctcatattactag |
10163660 |
T |
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| Q |
260 |
atagttgttgtg |
271 |
Q |
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| T |
10163661 |
atatttgctgtg |
10163672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 14611732 - 14611648
Alignment:
| Q |
10 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggt |
94 |
Q |
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| T |
14611732 |
cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaaggttaattggtgctgatccgcgaaatgcatctcgcttggt |
14611648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 9e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 90 - 266
Target Start/End: Original strand, 1609638 - 1609814
Alignment:
| Q |
90 |
ttggttactgcttcaaatattgagaatgttgttagaaggttgatggagacaacggaaggtgatgagatgcgagagagagcaataaaacttaaaaatgttg |
189 |
Q |
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||||||||||||||| ||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
1609638 |
ttggttactgcttcagatattgagaatgttgttagaacgttgatggatacaatggaaggtgatgagatgcgagagagagcaatgaaacttaaaaatgcta |
1609737 |
T |
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| Q |
190 |
ttggtacgtcaatggatgaaggtggagtctctcgtatggaaatggattctttcatcgctcatattactagatagttg |
266 |
Q |
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| T |
1609738 |
ttggtatgtcgatggatgaaggcggagtttctcgtatggaaatggattctttcatcgctcatatcactagatagttg |
1609814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 37722203 - 37722269
Alignment:
| Q |
197 |
gtcaatggatgaaggtggagtctctcgtatggaaatggattctttcatcgctcatattactagatag |
263 |
Q |
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| T |
37722203 |
gtcaatggatgaaggtggtgtttcacgtatggaactggattctttcattgcccatgtgactagatag |
37722269 |
T |
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