View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2730_high_2 (Length: 552)

Name: NF2730_high_2
Description: NF2730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2730_high_2
NF2730_high_2
[»] chr1 (3 HSPs)
chr1 (291-552)||(14597098-14597359)
chr1 (31-240)||(14596838-14597047)
chr1 (31-240)||(14611523-14611732)
[»] chr2 (1 HSPs)
chr2 (33-235)||(15417057-15417259)
[»] chr5 (1 HSPs)
chr5 (93-234)||(12192718-12192859)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 291 - 552
Target Start/End: Original strand, 14597098 - 14597359
Alignment:
Q  291 gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14597098 gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca 14597197  T
Q  391 gacacagattctgctactgtaggagcatcgagtggttcacgaggtttcctaagaacacctcctggacgtccatacctgacgttaggatgatctgcaagag 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14597198 gacacagattctgctactgtaggagcatcgagtggttcacgaggtttcctaagaacacctcctggacgtccatacctgacgttaggatgatctgcaagag 14597297  T
Q  491 ggcgaccttggaactcagcgactggtatgctatcagccaacatggatgaattaccgaatcgc 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14597298 ggcgaccttggaactcagcgactggtatgctatcagccaacatggatgaattaccaaatcgc 14597359  T

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Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 31 - 240
Target Start/End: Original strand, 14596838 - 14597047
Alignment:
Q  31 cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacaga 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14596838 cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgcagatccacgaaatgcatctcgcttggttacacaatatacaga 14596937  T
Q  131 acgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttca 230  Q
    ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14596938 acgccatccacgattgtgcatgcggtaccctgtaaccacatcctctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttca 14597037  T
Q  231 tacctacatg 240  Q
    ||||||||||    
T  14597038 tacctacatg 14597047  T

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Target: chr1; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 14611732 - 14611523
Alignment:
Q  31 cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacaga 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||    
T  14611732 cagaacctgtggcccatcttagcacctggtgtagtcgatcagtaaggttaattggtgctgatccgcgaaatgcatctcgcttggtcacgcaatatacaga 14611633  T
Q  131 acgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttca 230  Q
    |||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||     
T  14611632 acgccatccacggttgtgcatgcggtaacctgtaacgacgtcctctgtcactgatccataaatccatcccactctgtctccccattctgtcttctcttcg 14611533  T
Q  231 tacctacatg 240  Q
    ||||||||||    
T  14611532 tacctacatg 14611523  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 235
Target Start/End: Original strand, 15417057 - 15417259
Alignment:
Q  33 gaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcatctcgcttggttacacaatatacagaac 132  Q
    |||||||| ||||||||||| || |||||||  ||||| || ||||| || ||||||| |||||| || || ||||  || || |  |||||||  || |    
T  15417057 gaacctgttgcccatcttagaacttggtgtaaacgatcggtgagatttataggtgctgttccacggaaagcgtctctttttgtgatgcaatatatcgatc 15417156  T
Q  133 gccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactctttctccccattctgtcttgtcttcata 232  Q
     ||||||||| |||||||| | ||| || || || || |||||||||||||| ||||||||||| || | ||| |||||||||||||| || || |||||    
T  15417157 tccatccacggttgtgcattctgtaaccagttacaacatcttctgtcactgatccataaatccaacctattctatctccccattctgttttatcctcata 15417256  T
Q  233 cct 235  Q
    |||    
T  15417257 cct 15417259  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 93 - 234
Target Start/End: Original strand, 12192718 - 12192859
Alignment:
Q  93 ccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaa 192  Q
    ||||| || ||||| | |||||| |||||||| ||||| | |||||| | ||||||||| |  || ||||| || || || || || || ||||| ||||    
T  12192718 ccacggaaggcatccctcttggtcacacaatacacagacctccatcctctattgtgcattctataacctgtcacaacatcctcggttaccgacccgtaaa 12192817  T
Q  193 tccatcccactctttctccccattctgtcttgtcttcatacc 234  Q
    ||||||| ||||| ||||||||||| ||||| ||||||||||    
T  12192818 tccatccaactctatctccccattcggtcttatcttcatacc 12192859  T

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