View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2730_high_21 (Length: 308)

Name: NF2730_high_21
Description: NF2730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2730_high_21
NF2730_high_21
[»] chr4 (16 HSPs)
chr4 (2-283)||(2533897-2534178)
chr4 (8-299)||(5035190-5035481)
chr4 (1-283)||(2525339-2525621)
chr4 (1-279)||(2490716-2490994)
chr4 (7-279)||(2518821-2519093)
chr4 (1-197)||(2467212-2467411)
chr4 (1-146)||(2486021-2486173)
chr4 (73-118)||(2361217-2361262)
chr4 (69-118)||(2381641-2381690)
chr4 (69-118)||(2391269-2391318)
chr4 (58-175)||(2547236-2547353)
chr4 (73-196)||(2621417-2621540)
chr4 (78-118)||(12124594-12124634)
chr4 (88-118)||(2482529-2482559)
chr4 (234-279)||(2477156-2477201)
chr4 (62-113)||(2393836-2393888)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 283
Target Start/End: Complemental strand, 2534178 - 2533897
Alignment:
Q  2 tctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaattt 101  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2534178 tctctacttccactttagacctcaaatcgctcactctctaccaccctgacagtgttcctgaaaatgagttccgagctttgtccaagaagatgaaaaattt 2534079  T
Q  102 gacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagagctcatccttaccgac 201  Q
     |||||||||||||||||||||||||| | |||||||||||||||||||  | | |||||||||||||||||||  || ||||| |||||||||||||||    
T  2534078 aacatctctcacttgttatcaaatgagctatatcaacaagaatgatctcttcttgattgctgattgtttccctttacttgaagaactcatccttaccgac 2533979  T
Q  202 actggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactc 283  Q
     |||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  2533978 tctggttgtccccataattgtgcgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactc 2533897  T

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Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 8 - 299
Target Start/End: Complemental strand, 5035481 - 5035190
Alignment:
Q  8 cttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatc 107  Q
    ||||||||||| |||||||||| |||||||| |||||| ||| ||| || |||||||||||||| |||||||||||| |||||||||||| ||| || ||    
T  5035481 cttcccctttaaacctcaaatcgctcactctttaccacgctgtcagggttcctgaaaatgagttgcgagctttgtccgagaagatgaaaagtttaacgtc 5035382  T
Q  108 tctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagagctcatccttaccgacactggt 207  Q
    |||| |||||||||||||||||||||||||||||||||||||   | | |||||||||||||||||||  |||||||| || |||||||| || ||||||    
T  5035381 tctcgcttgttatcaaatgagatttatcaacaagaatgatcttttcttgattgctgattgtttccctttactcgaagaactaatccttactgatactggt 5035282  T
Q  208 tgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactcgcaataacgtctgtgg 299  Q
    |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||| | |||| |||| ||||    
T  5035281 tgtccccataattgtgctatagatagtgatgatcaattcttagcgcttcccaaactccgcaggattgctttaactagtaatatcgtcggtgg 5035190  T

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Target: chr4; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 2525621 - 2525339
Alignment:
Q  1 atctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatt 100  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||   ||  || ||| |||||||||| || | |||||||||||| ||||||||||    
T  2525621 atctccactttccctttagacctcaaatcgctcactctctaccacccccccaaggttcctcaaaatgagttgcgtgttttgtccaagaaaatgaaaaatt 2525522  T
Q  101 tgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagagctcatccttaccga 200  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||   | ||||||||||||||||||||   |||||||| ||||||||||||||    
T  2525521 tgacatctctcacttgttatcaactgagatttattaacaagaatgatctgctcttcattgctgattgtttccctctactcgaagaactcatccttaccga 2525422  T
Q  201 cactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgctttaactc 283  Q
    |||||||||||    ||| ||||  |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  2525421 cactggttgtcgtagtaactgtgtgatagatagtgatgatcaattcttggcgcttcccaaactccgcaggattgctttaactc 2525339  T

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Target: chr4; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 2490994 - 2490716
Alignment:
Q  1 atctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatt 100  Q
    ||||| |||| |||||| ||||||||||| ||| |||||||| | ||   ||| || || | |||||| || ||||||||||||  || |||||||||||    
T  2490994 atctccactttccctttggacctcaaatcgctcgctctctacgagccaatcagggttcccgcaaatgaattgcgagctttgtccgggacgatgaaaaatt 2490895  T
Q  101 tgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagagctcatccttaccga 200  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||    | |||||||||||||||||||  ||||| || |||||||| |||||    
T  2490894 tgacatctctcacttgttatcgaatgaggtttatcaacaagaatgatctcttttttattgctgattgtttccctttactcgacgaactcatcctaaccga 2490795  T
Q  201 cactggttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 279  Q
    ||  |||  |||||| |||| ||   |||| | |||||||| |||  ||| ||||||||||||||||| ||||||||||    
T  2490794 caacggtaatccccaaaattatgtgctagacaatgatgatcaattattggtgcttcccaaactccgcaagattgcttta 2490716  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 7 - 279
Target Start/End: Complemental strand, 2519093 - 2518821
Alignment:
Q  7 acttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacat 106  Q
    |||| |||||||||||||| ||| |||||||||||||| |||  ||   | ||| || | | ||| | |||||||||  | || ||||||||||||||||    
T  2519093 actttccctttagacctcatatcgctcactctctaccatcctatcacccttcctaaagaagggttgcaagctttgtctcaaaacatgaaaaatttgacat 2518994  T
Q  107 ctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagagctcatccttaccgacactgg 206  Q
     ||||||||||||| |||||| || |||| ||||||||||||||  | |||||||||||||||||||||  ||| |||| |||||||||||||| ||       
T  2518993 atctcacttgttattaaatgaaatatatccacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaactcatccttaccgataccat 2518894  T
Q  207 ttgtccccataattgtgctatagatagtgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 279  Q
    || | || || |||  |  ||||||| ||||  || |||| |||||||||| |||||||||| ||||||||||    
T  2518893 ttataccaatgatttggtgatagatattgattttcaattcttggcgcttcctaaactccgcaagattgcttta 2518821  T

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Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 2467411 - 2467212
Alignment:
Q  1 atctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatt 100  Q
    ||||| |||| |||||| ||||||||||| |||||||||||||||||    |  || |||| | ||| ||| |||||||| |||||  ||||||||||||    
T  2467411 atctccactttccctttggacctcaaatccctcactctctaccaccccataacggttcctgcagatgggttgcgagctttctccaaagagatgaaaaatt 2467312  T
Q  101 tgacatctctcacttgttatcaaatgagattt---atcaacaagaatgatctcaacatcattgctgattgtttcccttccctcgaagagctcatccttac 197  Q
    ||||||| ||||||||||| | |||    |||   ||| ||||||| |||||   | |||||||||||||||||||||  ||||||||||||||||||||    
T  2467311 tgacatcactcacttgttaccgaattgcttttgatatcgacaagaacgatcttttcttcattgctgattgtttccctttactcgaagagctcatccttac 2467212  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 2486173 - 2486021
Alignment:
Q  1 atctctacttcccctttagacctcaaatcactcactctctaccaccctgacagtgtgcctgaaaatgagttccgagctttgtccaagaagatgaaaaatt 100  Q
    ||||| |||| |||||| |||||||||||||||||||||||| | ||   |||  | |||| |||||   | |||||||||||||| |||||||||||||    
T  2486173 atctccactttccctttggacctcaaatcactcactctctacgagcccatcaggcttcctgcaaatgctctgcgagctttgtccaaaaagatgaaaaatt 2486074  T
Q  101 tgacatctc-------tcacttgttatcaaatgagatttatcaacaagaatga 146  Q
    |||||||||       ||| ||||||| |||| ||||||||||||||||||||    
T  2486073 tgacatctctcaatagtcaattgttataaaattagatttatcaacaagaatga 2486021  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 2361217 - 2361262
Alignment:
Q  73 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 118  Q
    |||||||||||||| || ||||||||||||||||||||||||||||    
T  2361217 cgagctttgtccaaaaaaatgaaaaatttgacatctctcacttgtt 2361262  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 2381641 - 2381690
Alignment:
Q  69 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 118  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2381641 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2381690  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 2391269 - 2391318
Alignment:
Q  69 gttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgtt 118  Q
    |||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  2391269 gttccgagctttgtccaaaaagatgaaaaatttgacctctcttacttgtt 2391318  T

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Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 175
Target Start/End: Complemental strand, 2547353 - 2547236
Alignment:
Q  58 cctgaaaatgagttccgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatca 157  Q
    |||| ||||| ||| |||||||||||  | ||||||||||||||||| ||||||| |||||   |||| |  ||||||| |||||||||| |   | |||    
T  2547353 cctgcaaatgggttgcgagctttgtctgaaaagatgaaaaatttgacgtctctcatttgttccaaaatcacctttatcagcaagaatgatttattcttca 2547254  T
Q  158 ttgctgattgtttccctt 175  Q
    ||||||||||||||||||    
T  2547253 ttgctgattgtttccctt 2547236  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 196
Target Start/End: Original strand, 2621417 - 2621540
Alignment:
Q  73 cgagctttgtccaagaagatgaaaaatttgacatctctcacttgttatcaaatgagatttatcaacaagaatgatctcaacatcattgctgattgtttcc 172  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||| | ||| |     |||  ||||||||||||   | || |||||||||||||||    
T  2621417 cgagctttctccaaaaatatgaaaaatttgacatctctcacttgttaccgaattaataaaatccgcaagaatgatctattcttccttgctgattgtttcc 2621516  T
Q  173 cttccctcgaagagctcatcctta 196  Q
    |||  |||||||| |||| |||||    
T  2621517 ctttactcgaagaactcaacctta 2621540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 118
Target Start/End: Complemental strand, 12124634 - 12124594
Alignment:
Q  78 tttgtccaagaagatgaaaaatttgacatctctcacttgtt 118  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  12124634 tttgtccaaaaagatgaaaaatttgacctctctcacttgtt 12124594  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 2482559 - 2482529
Alignment:
Q  88 aagatgaaaaatttgacatctctcacttgtt 118  Q
    |||||||||||||||||||||||||||||||    
T  2482559 aagatgaaaaatttgacatctctcacttgtt 2482529  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 2477201 - 2477156
Alignment:
Q  234 tgatgatcgattcctggcgcttcccaaactccgcaggattgcttta 279  Q
    |||||||| |||  ||||||||||||||||||||| ||||||||||    
T  2477201 tgatgatcaattgttggcgcttcccaaactccgcaagattgcttta 2477156  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 113
Target Start/End: Original strand, 2393836 - 2393888
Alignment:
Q  62 aaaatgagttccgagctttgtccaagaagatg-aaaaatttgacatctctcac 113  Q
    |||||| ||| |||||||||||| | |||||| ||||||||||||||||||||    
T  2393836 aaaatgggttgcgagctttgtcccaaaagatgaaaaaatttgacatctctcac 2393888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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