View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2730_high_3 (Length: 528)
Name: NF2730_high_3
Description: NF2730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2730_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 14599817 - 14599313
Alignment:
| Q |
1 |
atgaaagctgaagaacaatatgtttccaattctttatttaccggaggattcaatagtgtaacaagagctcatctaatggacaaggttattgattctgaag |
100 |
Q |
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| T |
14599817 |
atgaaagctgaagaacaatatgtttccaattctttatttaccggaggattcaatagtgtaacaagagctcatctaatggacaaggttattgattctgaag |
14599718 |
T |
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| Q |
101 |
taactcatcctcaaatggcaggggctaaaggatcttcttgttcaatttgtgatgggaaggttatgagggatgaaagaggaaaagatgtcactccatgtga |
200 |
Q |
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| T |
14599717 |
taactcatcctcaaatggcaggggctaaaggatcttcttgttcaatttgtgatgggaaggttatgagagatgaaagaggaaaagatgtcactccatgtga |
14599618 |
T |
|
| Q |
201 |
gtgtaggtatgtatacatatgttaaagttttgcattaagtccaaataacgacgtgcgacaaaatcagaaatgaatttttgaatttatccagttctaaatt |
300 |
Q |
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| T |
14599617 |
gtgtaggtatgtatacatatgttaaagttttgcattaagttcaaataacgacgtgcgacaaaatcagaaatgaa-atttgaatttatccatttctaaatt |
14599519 |
T |
|
| Q |
301 |
ccagtcgttatttcaactttttaatagatatgtgtgagtgtgtggaaatttataatttgcattcatatcttgcaaatattattatgacttgtgcaatgaa |
400 |
Q |
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| T |
14599518 |
ccagtcgttatttcaactttttaatagatatgtgtgagtgtgtggaaattgataatttgcattcatatcttgcaaatattattatgacttgtgcaatgaa |
14599419 |
T |
|
| Q |
401 |
actaacaagattacaaaataatacaaattttatcaggtacaagatttgtagagattgttttatagatgcgcagaaagaaaccggcacgtgtcctggatgt |
500 |
Q |
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| T |
14599418 |
actaacaagattacaaaataataccaattttatcaggtacaagatttgtagagattgttttatagatgcgcagaaagaaaccggcacgtgtcccggatgt |
14599319 |
T |
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| Q |
501 |
aaggag |
506 |
Q |
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|||||| |
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| T |
14599318 |
aaggag |
14599313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 14608638 - 14608848
Alignment:
| Q |
1 |
atgaaagctgaagaacaatatgtttccaattctttatttaccggaggattcaatagtgtaacaagagctcatctaatggacaaggttattgattctgaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| | |
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| T |
14608638 |
atgaaagctgaagaacaatatgtttccaattctttgtttaccggaggattcaatagtgtaacaagagctcatctaatggatagagtgattgattctgagg |
14608737 |
T |
|
| Q |
101 |
taactcatcctcaaatggcaggggctaaaggatcttcttgttcaatttgtgatgggaaggttatgagggatgaaagaggaaaagatgtcactccatgtga |
200 |
Q |
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| T |
14608738 |
tgactcatcctcaaatggcaggggctaaaggatctaaatgttcaatttgtgctggaaatattatgaaggatgagaggggacatgatgtgactccatgtga |
14608837 |
T |
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| Q |
201 |
gtgtaggtatg |
211 |
Q |
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| T |
14608838 |
gtgtaggtatg |
14608848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 399 - 469
Target Start/End: Original strand, 14609074 - 14609143
Alignment:
| Q |
399 |
aaactaacaagattacaaaataatacaaattttatcaggtacaagatttgtagagattgttttatagatgc |
469 |
Q |
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| T |
14609074 |
aaactaactagaatatataataataccaattt-atcaggtacaagatttgcagagattgttttatagatgc |
14609143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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