View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2730_high_8 (Length: 345)
Name: NF2730_high_8
Description: NF2730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2730_high_8 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 174 - 345
Target Start/End: Original strand, 14599646 - 14599817
Alignment:
| Q |
174 |
catccctcataaccttcccatcacaaattgaacaagaagatcctttagcccctgccatttgaggatgagttacttcagaatcaataaccttgtccattag |
273 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14599646 |
catctctcataaccttcccatcacaaattgaacaagaagatcctttagcccctgccatttgaggatgagttacttcagaatcaataaccttgtccattag |
14599745 |
T |
|
| Q |
274 |
atgagctcttgttacactattgaatcctccggtaaataaagaattggaaacatattgttcttcagctttcat |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14599746 |
atgagctcttgttacactattgaatcctccggtaaataaagaattggaaacatattgttcttcagctttcat |
14599817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 174 - 345
Target Start/End: Complemental strand, 14608809 - 14608638
Alignment:
| Q |
174 |
catccctcataaccttcccatcacaaattgaacaagaagatcctttagcccctgccatttgaggatgagttacttcagaatcaataaccttgtccattag |
273 |
Q |
| |
|
||||| |||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||| || | |||||||| |
|
|
| T |
14608809 |
catccttcataatatttccagcacaaattgaacatttagatcctttagcccctgccatttgaggatgagtcacctcagaatcaatcactctatccattag |
14608710 |
T |
|
| Q |
274 |
atgagctcttgttacactattgaatcctccggtaaataaagaattggaaacatattgttcttcagctttcat |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14608709 |
atgagctcttgttacactattgaatcctccggtaaacaaagaattggaaacatattgttcttcagctttcat |
14608638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University