View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2731_high_6 (Length: 238)
Name: NF2731_high_6
Description: NF2731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2731_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 22513283 - 22513506
Alignment:
| Q |
1 |
ttatgattcatggataatgtttgaacataattttttggggattttgtgggtcaggtcaaggagcgggtgaa-caaaaagggctctgtatcattgcaatta |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22513283 |
ttatgattcatggataatgtttgaacataattttttggggattttgtgggtcaggtcaaggagcgggtgaagcaaaaagggctctgtatcattgcaatta |
22513382 |
T |
|
| Q |
100 |
ttgtaataacgatcttacaggacaaatccggattaagtgtgtcgtgtgctcagattttgacttatgtgttgagtgcttttctgttggaactgagctgaca |
199 |
Q |
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||||||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22513383 |
ttgtaataaagatcttgcaagacaaatccggattaagtgtgtcgtgtgcccagattttgacttatgtgttgagtgcttttctgttggaactgaggtgaca |
22513482 |
T |
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| Q |
200 |
ccccacaaaagcaatcatgcttat |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
22513483 |
ccccacaaaagcaatcatgcttat |
22513506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 22513748 - 22513526
Alignment:
| Q |
1 |
ttatgattcatggataatgtttgaacataattttttggggattttgtgggtcaggtcaaggagcgggtgaa-caaaaagggctctgtatcattgcaatta |
99 |
Q |
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|||||||||||||||||||||||| ||||||||| | ||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||||| |||| |
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| T |
22513748 |
ttatgattcatggataatgtttgagcataattttctagggattttgtgagtcatgtcaaggagcgggtgaagcgaaaagggctctgtatcattgccatta |
22513649 |
T |
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| Q |
100 |
ttgtaataacgatcttacaggacaaatccggattaagtgtgtcgtgtgctcagattttgacttatgtgttgagtgcttttctgttggaactgagctgaca |
199 |
Q |
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| T |
22513648 |
ttgtaataacgatcttacaggacaaatccggattaagtgtgccgtgtgcccagattttgacttatgtgttgagtgcttttctgttggagctgagctgaca |
22513549 |
T |
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| Q |
200 |
ccccacaaaagcaatcatgctta |
222 |
Q |
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| T |
22513548 |
ccccacaaaagcaatcatgctta |
22513526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 23045973 - 23045756
Alignment:
| Q |
6 |
attcatggataatgtttgaacataattttttggggattttgtgggtcaggtcaaggagcgggtgaa-caaaaagggctctgtatcattgcaattattgta |
104 |
Q |
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||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||| || ||| |||||||| | |||||||||||||||| |||| |
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| T |
23045973 |
attcatggataatgtcttaacataattttctggggattttgtgagtcaggtcaaggagctggggaagcaaaaaggcatttgtatcattgcaattactgta |
23045874 |
T |
|
| Q |
105 |
ataacgatcttacaggacaaatccggattaagtgtgtcgtgtgctcagattttgacttatgtgttgagtgcttttctgttggaactgagctgacacccca |
204 |
Q |
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|| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
23045873 |
atttcgatattacaggaaaaatccggattaagtgtgtcgtgtgctcagatttcgacttatgtgttgagtgcttttcggttggagctgagctgacacccca |
23045774 |
T |
|
| Q |
205 |
caaaagcaatcatgctta |
222 |
Q |
| |
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|||||||||||||||||| |
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| T |
23045773 |
caaaagcaatcatgctta |
23045756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 53 - 218
Target Start/End: Original strand, 9523348 - 9523514
Alignment:
| Q |
53 |
aggtcaaggagcgggtgaa-caaaaagggctctgtatcattgcaattattgtaataacgatcttacaggacaaatccggattaagtgtgtcgtgtgctca |
151 |
Q |
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|||||||||||| |||||| ||||| |||||||||||||||||||||| ||||| || || |||| ||| |||||| |||||||||| ||||||| | |
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| T |
9523348 |
aggtcaaggagcaggtgaagcaaaatgggctctgtatcattgcaattactgtaagaaaaatattaccggagtaatccgtattaagtgtgccgtgtgcccc |
9523447 |
T |
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| Q |
152 |
gattttgacttatgtgttgagtgcttttctgttggaactgagctgacaccccacaaaagcaatcatg |
218 |
Q |
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| T |
9523448 |
gattttgacttatgtgttgagtgcttttctgttggagctgagctgacaccccacaaaagcaatcatg |
9523514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 50 - 217
Target Start/End: Original strand, 9495528 - 9495696
Alignment:
| Q |
50 |
gtcaggtcaaggagcgggtgaa-caaaaagggctctgtatcattgcaattattgtaataacgatcttacaggacaaatccggattaagtgtgtcgtgtgc |
148 |
Q |
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||||||||||||||| |||||| | ||||||||| |||||||||||||||| |||||||| ||| |||||||| ||||||| || ||||||| | |||| |
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| T |
9495528 |
gtcaggtcaaggagcaggtgaagcgaaaagggctttgtatcattgcaattactgtaataaagatattacaggaaaaatccgtatcaagtgtgccaagtgc |
9495627 |
T |
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| Q |
149 |
tcagattttgacttatgtgttgagtgcttttctgttggaactgagctgacaccccacaaaagcaatcat |
217 |
Q |
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| T |
9495628 |
ccagattttgacttatgtattgagtgcttttctgttggagctgaggtgacaccccacaaaagcaatcat |
9495696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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