View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2731_low_2 (Length: 447)
Name: NF2731_low_2
Description: NF2731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2731_low_2 |
 | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 9 - 430
Target Start/End: Original strand, 7767503 - 7767924
Alignment:
| Q |
9 |
atgaaaatgaaatcttgaccaaggccaccaccaaaaatgaatttagctaatgagttggttgcagaagcagcacatgtgttgtttgtgcaacctggcttga |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7767503 |
atgaaaatgaaatcttcaccaaggccaccaccaaaaatgaatttagctaatgagttggttgcagaagcagcacatgtgttgtttgtgcaacctggcttga |
7767602 |
T |
|
| Q |
109 |
atgggccattgcagccaacacatgaagtatctgtgcatcttgttgagccacattgaataggagtgtatgatgatgaattataatgagtgtcacaatcata |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7767603 |
atgggccattgcagccaacacatgcagtatctgtacatcttgttgagccacattgaataggagtgtatgatgatgaattataatgagtgtcacaatcata |
7767702 |
T |
|
| Q |
209 |
ccatagattttctccagcaagatcaatggctagattgaaatttgttctaggagttcctatgccaactgatgtgtagaatagattggttgatgggtctttt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7767703 |
ccatagattttctccagcaagatcaatggctagattgaaatttgttctaggagttcctatgccaactgatgtgtagaatagattggttgatgggtctttt |
7767802 |
T |
|
| Q |
309 |
ctgatgggaagaataaatgggtgtggttttgtagtagtaggaggttgagtagctgataaagaagaaactgagaaaagggctagtgatatgaggaagaaat |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7767803 |
ctgatgggaagaataaatgggtgtggttttgtagtagtaggaggttgagtagctgataaagaagaaactgagaaaagggctagtgatatgaggaagaaat |
7767902 |
T |
|
| Q |
409 |
gcatgatgacagaagtagaagc |
430 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
7767903 |
gcatgatgacagaagtataagc |
7767924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 4 - 336
Target Start/End: Original strand, 7774825 - 7775157
Alignment:
| Q |
4 |
gtgagatgaaaatgaaatcttgaccaaggccaccaccaaaaatgaatttagctaatgagttggttgcagaagcagcacatgtgttgtttgtgcaacctgg |
103 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||||||||||||| || |
|
|
| T |
7774825 |
gtgaaatgaaaatgaaatcttcaccaaggtcaccaccaaaaatgaatttggctaatgagttggttgcagtagcaggacatgtattgtttgtgcaaccagg |
7774924 |
T |
|
| Q |
104 |
cttgaatgggccattgcagccaacacatgaagtatctgtgcatcttgttgagccacattgaataggagtgtatgatgatgaattataatgagtgtcacaa |
203 |
Q |
| |
|
|||||||||||||| || |||| ||||| | ||||| |||||| |||||||||| ||| ||| |||| |||||||||||||||||||||| |||| |
|
|
| T |
7774925 |
tttgaatgggccattacaaccaatacatgcaacatctgaacatctttctgagccacatgcaattggaatgtaggatgatgaattataatgagtgttacaa |
7775024 |
T |
|
| Q |
204 |
tcataccatagattttctccagcaagatcaatggctagattgaaatttgttctaggagttcctatgccaactgatgtgtagaatagattggttgatgggt |
303 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7775025 |
tcataccaaaggttttctccagcaagatcaatggctagattgaaatttgttctaggagttcctatgccaactgatgtgtagaatagattggttgatgggt |
7775124 |
T |
|
| Q |
304 |
cttttctgatgggaagaataaatgggtgtggtt |
336 |
Q |
| |
|
||||| | || |||||||| || | |||||||| |
|
|
| T |
7775125 |
ctttttttataggaagaatgaaggagtgtggtt |
7775157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 7725786 - 7725737
Alignment:
| Q |
74 |
agcagcacatgtgttgtttgtgcaacctggcttgaatgggccattgcagc |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
7725786 |
agcaccacatgtgttgtttgtgcaacctggtttgaaagggccattgcagc |
7725737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 7698673 - 7698626
Alignment:
| Q |
261 |
gttcctatgccaactgatgtgtagaatagattggttgatgggtctttt |
308 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
7698673 |
gttccaatgccaactgaggtgtagaaaagattggttaatgggtctttt |
7698626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 7746709 - 7746758
Alignment:
| Q |
74 |
agcagcacatgtgttgtttgtgcaacctggcttgaatgggccattgcagc |
123 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
7746709 |
agcaccacatgtgttgtttgagcaacctggtttgaaatggccattgcagc |
7746758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 11252 - 10941
Alignment:
| Q |
15 |
atgaaatcttgaccaaggccaccaccaaaaatgaatttagctaatgagttggttgcagaagcagcacatgtgttgtttgtgcaacctggcttgaatgggc |
114 |
Q |
| |
|
|||| ||||| ||| ||||||||| ||||||||||| || ||||||||| ||| | ||||| |||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
11252 |
atgatatcttcaccgaggccaccattgaaaatgaatttggcaaatgagttgattgtattagcaggacatgtattgtttgtgcaacctggtttgaaggggc |
11153 |
T |
|
| Q |
115 |
cattgcagccaacacatgaagtatctgtgcatcttgttgagccacattgaataggagtgtatgatgatgaattataatgagtgtcacaatcataccatag |
214 |
Q |
| |
|
||||||| |||| |||| | |||||| ||| || |||||||||||| ||| ||| || ||||||||||| || |||||||||||||||||||| || |
|
|
| T |
11152 |
cattgcaaccaatgcatgtaatatctggacatttttttgagccacattcaattggaaaataggatgatgaattgtagtgagtgtcacaatcataccaaag |
11053 |
T |
|
| Q |
215 |
attttctccagcaagatcaatggctagattgaaatttgttctaggagttcctatgccaactgatgtgtagaatagattggttgatgggtcttttctgatg |
314 |
Q |
| |
|
|||||| || ||||||||||| ||||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
11052 |
attttcacctgcaagatcaat-----------aattttttcgaggtgttcctatgccaactgatgtgtagaaaagattggttgatgggtctttcttgatg |
10964 |
T |
|
| Q |
315 |
ggaagaataaatgggtgtggttt |
337 |
Q |
| |
|
||||||||||| |||||| |||| |
|
|
| T |
10963 |
ggaagaataaaagggtgttgttt |
10941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 21268500 - 21268565
Alignment:
| Q |
4 |
gtgagatgaaaatgaaatcttgaccaaggccaccaccaaaaatgaatttagctaatgagttggttg |
69 |
Q |
| |
|
|||| |||||||| ||||||| | ||||| |||||||||||||||||| || |||||||||||| |
|
|
| T |
21268500 |
gtgaaatgaaaatcaaatcttcatcaaggttaccaccaaaaatgaatttgactgatgagttggttg |
21268565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University