View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2731_low_5 (Length: 272)
Name: NF2731_low_5
Description: NF2731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2731_low_5 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 50566526 - 50566788
Alignment:
| Q |
10 |
aatatctaataattatgcttgttgtaattatttactttagcttttggaatatataataaatttccttctctttagaataaactatttactcatnnnnnnn |
109 |
Q |
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| T |
50566526 |
aatatctaataattatgcttgttgtaattatttactttagcttttggaatatataataaatttcgttctctttagaataaactatttactcattatatat |
50566625 |
T |
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| Q |
110 |
nnnnnnnnnnnnctaaagactaaatattgtctgaggagtttatttttacttgcagaaatcttgtttcaacagtgaattggatgtgtaagttggatctcga |
209 |
Q |
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| T |
50566626 |
atagatatatatctaaagactaaatattgtctgaggtgtttatttttacttgcagaaatcttgtttcaacagtgaattggatgtgtaagttggatctcga |
50566725 |
T |
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| Q |
210 |
agcaattgcactccaatctcgtagtgcagtgtacaaacccaaggcaagtttcatctgctcatt |
272 |
Q |
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| T |
50566726 |
agcaattgcactccaatctcgtagcgcagtgtacaaacccaaggcaagtttcatctgctcatt |
50566788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 266
Target Start/End: Complemental strand, 9987602 - 9987490
Alignment:
| Q |
154 |
tttacttgcagaaatcttgtttcaacagtgaattggatgtgtaagttggatctcgaagcaattgcactccaatctcgtagtgcagtgtacaaacccaagg |
253 |
Q |
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| T |
9987602 |
tttacttccagaaatattgtttcaacagtcaatttggacaccaagttggatctcaaagcaattgcactccaagctcgtaatgcagagtacaatcccaagg |
9987503 |
T |
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| Q |
254 |
caagtttcatctg |
266 |
Q |
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| T |
9987502 |
caagtttcatctg |
9987490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 50572504 - 50572569
Alignment:
| Q |
152 |
tttttacttgcagaaatcttgtttcaacagtgaattggatgtgtaagttggatctcgaagcaattg |
217 |
Q |
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| T |
50572504 |
tttttacttgcagaaatattgtttcaacagtaaattgggggcgtaagttagatctcaaagcgattg |
50572569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 50572447 - 50572492
Alignment:
| Q |
53 |
ttggaatatataataaatttccttctctttagaataaactatttac |
98 |
Q |
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| T |
50572447 |
ttggaatatgtaataaatttccttctctacagaataaactaattac |
50572492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 9987720 - 9987652
Alignment:
| Q |
10 |
aatatctaataattatgcttgttgtaattatttactttagcttttggaatatataataaatttccttct |
78 |
Q |
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| T |
9987720 |
aatatgtaataattatgcttttagttattatttactttgaattttggaacatatgataaatttgcttct |
9987652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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