View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2732_high_10 (Length: 275)
Name: NF2732_high_10
Description: NF2732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2732_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 1994583 - 1994852
Alignment:
| Q |
1 |
attagtaaaatatattgaaataacttcaaaagttatataagaaataaattattgaacacttgtaacttgattatgatgaatctttgatttatctatgata |
100 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1994583 |
attactaaaatatattgaaataacttcaaaagttttataagaaataaattattgaacacttgtgacttgattatgatgaatctttgatttatctatgata |
1994682 |
T |
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| Q |
101 |
ttgtgggtttaatataagaaattaactaaccttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaacttgtctcctttttctc |
200 |
Q |
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| T |
1994683 |
ttgtgggtttaatataagaaattaactaaccttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaacttgtctcctttttctc |
1994782 |
T |
|
| Q |
201 |
tcagccataatgtgatcttgtatctctgaagagcttctaagattcttggttcttttcttaattgcctttg |
270 |
Q |
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| T |
1994783 |
tcagccataatgtgatcttgtatctctgaagagcttctaagattcttggttcttttcttaattgtctttg |
1994852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 88 - 263
Target Start/End: Original strand, 1987708 - 1987878
Alignment:
| Q |
88 |
tttatctatgatattgtgggtttaatataagaaattaactaaccttcttcaatccaggtatagtggcagatagtgctatgaacctctcactaagaacttg |
187 |
Q |
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| T |
1987708 |
tttatcaatgatattgtgggttt-gtataaga----aactgaccttcttcaatccaggtatagtggcagacagtgctatgaacctttcagtaagaacttg |
1987802 |
T |
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| Q |
188 |
tctcctttttctctcagccataatgtgatcttgtatctctgaagagcttctaagattcttggttcttttcttaatt |
263 |
Q |
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| T |
1987803 |
tctcctttttctctcagccataatgtgatcttgcatctcacaagagcttctaagattcttagttcttttcttaatt |
1987878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 217
Target Start/End: Complemental strand, 45130793 - 45130763
Alignment:
| Q |
187 |
gtctcctttttctctcagccataatgtgatc |
217 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
45130793 |
gtctcctttttctctcagccataatgtgatc |
45130763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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