View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2732_high_12 (Length: 257)
Name: NF2732_high_12
Description: NF2732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2732_high_12 |
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| [»] scaffold1026 (1 HSPs) |
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| [»] scaffold0836 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 26196601 - 26196376
Alignment:
| Q |
16 |
ataggaaagaagatatttagggagttcttcattaacatgaaattcgtcaaacataactttgacctctgctcttatgacaccccaaaaagatttgagaaaa |
115 |
Q |
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| T |
26196601 |
ataggaaagaagatatttaaggagttcttcattaacatgaaatttgtcaaacataactttgaccactgctcttatgacaccccaaaaagatttgagaaaa |
26196502 |
T |
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| Q |
116 |
gcaaagttaaacccattcagatcccgattttgttaccatctgctaagaaaatcaaatctttaatttcctcctccgtgaaaggcctagaaagaatggaaat |
215 |
Q |
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| T |
26196501 |
gcaaagttaaacccattcagaccccgattttgttaccatctgctaagaaaatcaaatctttaatttcctcctccgtgaaaggcctagaaagaatggaaat |
26196402 |
T |
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| Q |
216 |
ttaagcaaaagagagaatcagaaact |
241 |
Q |
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| T |
26196401 |
ttaagcaaaagagagaatcagaaact |
26196376 |
T |
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Target: scaffold1026 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1026
Description:
Target: scaffold1026; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 1426 - 1492
Alignment:
| Q |
16 |
ataggaaagaagatatttagggagttcttcattaacatgaaattcgtcaaacataactttgacctctg |
83 |
Q |
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| T |
1426 |
atagaaaagaagaaatttagggagtt-ttcattagcataaaatttgtcaaacataacctttacctctg |
1492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0836 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0836
Description:
Target: scaffold0836; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 3438 - 3374
Alignment:
| Q |
16 |
ataggaaagaagatatttagggagttcttcattaacatgaaattcgtcaaacataactttgacctc |
81 |
Q |
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|||| |||||||| |||||||||||| ||||||| ||| ||||| |||||||||||| || ||||| |
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| T |
3438 |
atagaaaagaagaaatttagggagtt-ttcattagcataaaatttgtcaaacataacctttacctc |
3374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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