View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2732_high_4 (Length: 418)

Name: NF2732_high_4
Description: NF2732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2732_high_4
NF2732_high_4
[»] chr1 (6 HSPs)
chr1 (246-401)||(15425552-15425707)
chr1 (123-254)||(15425755-15425886)
chr1 (10-62)||(15425947-15425999)
chr1 (226-284)||(34334871-34334929)
chr1 (219-284)||(22031870-22031935)
chr1 (226-278)||(15575793-15575845)
[»] chr6 (2 HSPs)
chr6 (226-284)||(12654085-12654143)
chr6 (226-284)||(4660724-4660782)
[»] chr4 (8 HSPs)
chr4 (226-281)||(26623980-26624035)
chr4 (191-279)||(18995572-18995657)
chr4 (226-284)||(6082206-6082264)
chr4 (225-283)||(15182756-15182814)
chr4 (226-279)||(56172114-56172167)
chr4 (226-278)||(9255078-9255130)
chr4 (226-278)||(24789476-24789528)
chr4 (226-278)||(24818731-24818783)
[»] chr3 (6 HSPs)
chr3 (226-283)||(31550210-31550267)
chr3 (236-278)||(51059927-51059969)
chr3 (225-282)||(2148038-2148095)
chr3 (247-284)||(25084305-25084342)
chr3 (226-283)||(41868107-41868164)
chr3 (194-223)||(47733583-47733612)
[»] chr7 (4 HSPs)
chr7 (226-285)||(37375822-37375881)
chr7 (249-284)||(38277125-38277160)
chr7 (226-284)||(38273185-38273243)
chr7 (226-284)||(46025822-46025880)
[»] chr8 (1 HSPs)
chr8 (229-279)||(42261218-42261268)
[»] chr5 (2 HSPs)
chr5 (226-284)||(11734612-11734670)
chr5 (226-284)||(29098076-29098134)
[»] chr2 (3 HSPs)
chr2 (226-284)||(11798304-11798362)
chr2 (226-282)||(15920157-15920213)
chr2 (226-282)||(19382222-19382278)
[»] scaffold1379 (1 HSPs)
scaffold1379 (226-283)||(848-905)


Alignment Details
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 246 - 401
Target Start/End: Complemental strand, 15425707 - 15425552
Alignment:
Q  246 tatacatatgtcaacaaatatgattatattcaagtctcctcgtgtctatggaacacatacattagatatttgagtcccttaaatatttggttagaggttc 345  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15425707 tatatatatatcaacaaatatgattatattcaagtctcctcgtgtctatggaacacatacattagatatttgagtctcttaaatatttggttagaggttc 15425608  T
Q  346 catattttgtgcaataaaaggaaatttagtttatggagtgaatatgtaagggaaac 401  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15425607 catatttggtgcaataaaaggaaatttagtttatggagtgaatatttaagggaaac 15425552  T

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Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 123 - 254
Target Start/End: Complemental strand, 15425886 - 15425755
Alignment:
Q  123 caataagtacttattatttatgcaatccttaacacagtctttccacaagggcacgtgttaacatgacctaaaaataaacgatattcattcatacaaattc 222  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15425886 caataagtacttattatttatgcaatccttaacacagtcttttcataagggcacatgttaacatgacctaaaaataaacgatattcattcatacaaattc 15425787  T
Q  223 acattaatagcataaaacgacattatacatat 254  Q
    ||||||||||||||||||||||||||| ||||    
T  15425786 acattaatagcataaaacgacattatatatat 15425755  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 15425999 - 15425947
Alignment:
Q  10 ataatacttgctctcggagatctttagggcacatgttaatatacaaaagatag 62  Q
    |||| |||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  15425999 ataacacttgctctcagaggtctttagggcacatgttaatatataaaagatag 15425947  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 34334871 - 34334929
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctcc 284  Q
    ||||||||||||||||  || |||| |||| | ||||||||||||||||||||||||||    
T  34334871 ttaatagcataaaacggtataatacttatgcctacaaatatgattatattcaagtctcc 34334929  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 22031870 - 22031935
Alignment:
Q  219 attcacattaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctcc 284  Q
    ||||| ||||||| ||||||||||||   |||| | ||| ||| ||||||||||||||||||||||    
T  22031870 attcatattaatatcataaaacgacaaagtacaaaagtctacacatatgattatattcaagtctcc 22031935  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 15575845 - 15575793
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaa 278  Q
    |||||| |||||||| |||  ||||||||||| |||||||| |||||||||||    
T  15575845 ttaataacataaaacaacaaaatacatatgtctacaaatataattatattcaa 15575793  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 12654085 - 12654143
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctcc 284  Q
    |||||||||||||||||||  ||||||||| | |||||||||| |||||||||||||||    
T  12654085 ttaatagcataaaacgacaaaatacatatgcctacaaatatgactatattcaagtctcc 12654143  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 4660782 - 4660724
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctcc 284  Q
    |||||||||||||||||||   |||||||| | ||||||||||||||| ||| ||||||    
T  4660782 ttaatagcataaaacgacaaagtacatatgcctacaaatatgattatactcatgtctcc 4660724  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 26623980 - 26624035
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtc 281  Q
    ||||||||||| || ||||| ||||||||||| |||||||||| ||||||||||||    
T  26623980 ttaatagcatacaatgacataatacatatgtctacaaatatgactatattcaagtc 26624035  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 18995657 - 18995572
Alignment:
Q  191 taaaaataaacgatattcattcatacaaattcacattaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaag 279  Q
    |||||||||| ||||||||||||| ||  |||| ||| ||||||||||||||||   |||||| | | |||||||||||||||||||||    
T  18995657 taaaaataaatgatattcattcattca--ttcaaattgatagcataaaacgacaaagtacata-gcctacaaatatgattatattcaag 18995572  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 6082206 - 6082264
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctcc 284  Q
    |||||||||||||||| ||   |||||||| | |||||||||| |||||||||||||||    
T  6082206 ttaatagcataaaacggcaaagtacatatgcctacaaatatgactatattcaagtctcc 6082264  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 15182814 - 15182756
Alignment:
Q  225 attaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctc 283  Q
    |||||||||||| ||||||||  |||||||| | |||||| ||| ||||||||||||||    
T  15182814 attaatagcatacaacgacatagtacatatgcctacaaatgtgaatatattcaagtctc 15182756  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 56172167 - 56172114
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaag 279  Q
    |||||| |||||||||||| | |||||||| | ||||||| |||||||||||||    
T  56172167 ttaataacataaaacgacaatgtacatatgcctacaaatacgattatattcaag 56172114  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 9255078 - 9255130
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaa 278  Q
    ||||||||||||||| ||||  |||||||| | |||||||||||||| |||||    
T  9255078 ttaatagcataaaacaacatagtacatatgcctacaaatatgattatgttcaa 9255130  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 24789528 - 24789476
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaa 278  Q
    ||||||| |||||||||||  ||||||||| | || |||||||||||||||||    
T  24789528 ttaatagaataaaacgacaaaatacatatgcctacgaatatgattatattcaa 24789476  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 24818731 - 24818783
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaa 278  Q
    ||||||| |||||||||||  ||||||||| | || |||||||||||||||||    
T  24818731 ttaatagaataaaacgacaaaatacatatgcctacgaatatgattatattcaa 24818783  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 31550267 - 31550210
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctc 283  Q
    |||||||||||||||||||| ||||||||| |  ||||||| | ||||||||||||||    
T  31550267 ttaatagcataaaacgacatcatacatatgcctgcaaatataactatattcaagtctc 31550210  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 278
Target Start/End: Complemental strand, 51059969 - 51059927
Alignment:
Q  236 aaaacgacattatacatatgtcaacaaatatgattatattcaa 278  Q
    |||||||||| ||||||||||||||| |||||| |||||||||    
T  51059969 aaaacgacataatacatatgtcaacatatatgactatattcaa 51059927  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 2148095 - 2148038
Alignment:
Q  225 attaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtct 282  Q
    ||||||||||||||||| ||   |||| ||||| |||||||||| |||||||||||||    
T  2148095 attaatagcataaaacggcaaagtacaaatgtctacaaatatgactatattcaagtct 2148038  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 284
Target Start/End: Complemental strand, 25084342 - 25084305
Alignment:
Q  247 atacatatgtcaacaaatatgattatattcaagtctcc 284  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  25084342 atacatatgcctacaaatatgattatattcaagtctcc 25084305  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 41868107 - 41868164
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctc 283  Q
    |||||||||||||||| ||   ||| |||||| |||||||||| ||||||||||||||    
T  41868107 ttaatagcataaaacggcaaagtacctatgtctacaaatatgactatattcaagtctc 41868164  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 223
Target Start/End: Original strand, 47733583 - 47733612
Alignment:
Q  194 aaataaacgatattcattcatacaaattca 223  Q
    ||||||||||||||||||||||||||||||    
T  47733583 aaataaacgatattcattcatacaaattca 47733612  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 285
Target Start/End: Original strand, 37375822 - 37375881
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctcct 285  Q
    |||||||||||||||||||   |||||||| | |||||||||| |||||||| |||||||    
T  37375822 ttaatagcataaaacgacaaagtacatatgcctacaaatatgactatattcatgtctcct 37375881  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 284
Target Start/End: Complemental strand, 38277160 - 38277125
Alignment:
Q  249 acatatgtcaacaaatatgattatattcaagtctcc 284  Q
    |||||||||||||||||||| |||||||||||||||    
T  38277160 acatatgtcaacaaatatgactatattcaagtctcc 38277125  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 38273243 - 38273185
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctcc 284  Q
    |||||||||||||||  ||   |||||||| |||||||||||| |||||||||||||||    
T  38273243 ttaatagcataaaacagcaaagtacatatgccaacaaatatgactatattcaagtctcc 38273185  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 46025822 - 46025880
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctcc 284  Q
    |||||||||||||||||||   |||||||| | |||||||||| |||||||| ||||||    
T  46025822 ttaatagcataaaacgacaaagtacatatgcctacaaatatgactatattcatgtctcc 46025880  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 42261268 - 42261218
Alignment:
Q  229 atagcataaaacgacattatacatatgtcaacaaatatgattatattcaag 279  Q
    ||||||||||||||||| |||| ||||   |||||||||||||||||||||    
T  42261268 atagcataaaacgacatgatacttatgcttacaaatatgattatattcaag 42261218  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 11734612 - 11734670
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctcc 284  Q
    |||||||||||||||| ||   |||||||| | |||||||||| |||||||||||||||    
T  11734612 ttaatagcataaaacggcaaagtacatatgcctacaaatatgactatattcaagtctcc 11734670  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 29098134 - 29098076
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctcc 284  Q
    |||||||||||||||| ||   |||||||| | |||||||||| |||||||||||||||    
T  29098134 ttaatagcataaaacggcaaggtacatatgcctacaaatatgactatattcaagtctcc 29098076  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 11798304 - 11798362
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctcc 284  Q
    |||||||||||||||||||   ||| |||| | |||||||||| |||||||||||||||    
T  11798304 ttaatagcataaaacgacaaagtacctatgcctacaaatatgactatattcaagtctcc 11798362  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 15920213 - 15920157
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtct 282  Q
    |||||||||||||||| ||   |||||||| | |||||||||| |||||||||||||    
T  15920213 ttaatagcataaaacggcaaagtacatatgcctacaaatatgactatattcaagtct 15920157  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 19382222 - 19382278
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtct 282  Q
    ||||||||||||||||||||  ||  |||| | | ||||||||||||||||||||||    
T  19382222 ttaatagcataaaacgacatattatctatgcctataaatatgattatattcaagtct 19382278  T

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Target: scaffold1379 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 848 - 905
Alignment:
Q  226 ttaatagcataaaacgacattatacatatgtcaacaaatatgattatattcaagtctc 283  Q
    |||||| ||||||||| ||  |||| |||||| |||||||||| ||||||||||||||    
T  848 ttaataacataaaacggcaaaatacttatgtctacaaatatgactatattcaagtctc 905  T

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