View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2732_high_5 (Length: 404)
Name: NF2732_high_5
Description: NF2732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2732_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 397
Target Start/End: Original strand, 48845946 - 48846325
Alignment:
| Q |
18 |
cccaactttaccaaacttgtccatcaatgtaatgtatgttacacgatccggactgtgactgctagctctcatctttacatataattcctcggccttgtca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
48845946 |
cccaactttaccaaacttgtccatcaatgtaatgtatgttacacgatccggactgtgactgctagctctcatctttacatataattccttggccttgtca |
48846045 |
T |
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| Q |
118 |
agttttcctgcagcacaaagagcatcgatcagaaccgtataagtgataacatcaggcccgcatccttcattgtccatttccttgaaaatcccccacgcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
48846046 |
agttttcctgcagcacaaagagcatcgatcagaaccgtataagtgataacatcaggcccgcatccttcatcgtccatttccttgaaaatcccccatgcat |
48846145 |
T |
|
| Q |
218 |
cgtcaattctcctcgccctcccaagcgctctaatacatattgtatacgtgtaaatattcggcctcaaaccaatactcttcatttcttccaataaattcat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48846146 |
cgtcaattctcctcgccctcccaagcgctctaatacatattgtatacgtgtaaatattcggcctcaaaccaatactcttcatttcttccaataaattcat |
48846245 |
T |
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| Q |
318 |
aatcttcccggtgtcccctctcctccctaatgcaaccattaacgccgagtatgtcttcatgctaggcttcatcccttctg |
397 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48846246 |
aatcttcctggtgtcccctctcctccctaatgcaaccattaacgccgagtatgtcttcatgctaggcttcatcccttctg |
48846325 |
T |
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