View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2732_high_6 (Length: 370)
Name: NF2732_high_6
Description: NF2732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2732_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 17 - 352
Target Start/End: Original strand, 31104340 - 31104675
Alignment:
| Q |
17 |
ttttctcaaccgactgaattttttattgtgaacaatcaagtaacacattaccgaggtttaaatagaagagggtcattctattttcggaatcctgaacaaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31104340 |
ttttctcaaccgactgaattttttattgtgaacaatcaagtaacacattaccgaggtttaaatagaagagggtcattctattttcggaatcctgaacaaa |
31104439 |
T |
|
| Q |
117 |
ctaaaatttatataaaagattatgtttgtttttattttgagaggagataaaagataaagatatcatttaattttattttatttcaaaggagaaagttatc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31104440 |
ctaaaatttatataaaagattatgtttgtttttattttgagaggagataaaagataaagatatcatttaatttaattttatttcaaaggagaaagttatc |
31104539 |
T |
|
| Q |
217 |
aactaattttnnnnnnngataaaattgatcgtaatagtannnnnnnnnnnnnatctatatctattctattctttaacaatatataaagtgaagtatannn |
316 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31104540 |
aactaatttttaaaaaagataaaattgatcgtaatagtatttttttttttttatctatatctattctattctttaacaatatataaagtgaagtatgatt |
31104639 |
T |
|
| Q |
317 |
nnnnnnaagtggattttttattatttctaagtacgt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31104640 |
ttttttaagtggattttttattatttctaagtacgt |
31104675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University