View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2732_high_9 (Length: 296)
Name: NF2732_high_9
Description: NF2732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2732_high_9 |
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| [»] scaffold0002 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 11492112 - 11491832
Alignment:
| Q |
14 |
ttctcgagttggtttagattcaatttattttatgaattgtttataggtgaattaggggtcat-----------------gtttcatcaccttctgcatag |
96 |
Q |
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| T |
11492112 |
ttcttgagttggtttagattcaatttattttatgaattgtttataggtgaattagggttcataaggatggttcacaattgtttcattaccttctgcatag |
11492013 |
T |
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| Q |
97 |
ttctaaatatgtaagttcttcatcttctctcatcatttgaaaagttaatagggatttagtgaaaaagatgaagctagtgctcgttaagtgtttgagaaca |
196 |
Q |
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| T |
11492012 |
ttctaaatatgtaagttcttcatcttctctcatcatttgaaaagtta-tagggatttagtgaaaaagatgaagctagtgctcgttaagtgtttgagaaca |
11491914 |
T |
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| Q |
197 |
ctctatttttgtacttctacgatattgaataacatggaaaatatgggtattttggacaaaaaattcaatcgcatgcaaccaa |
278 |
Q |
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| T |
11491913 |
ctctatttttgtacttatacgatattgaataacatggaaaatatgggtgttttggacaaaaaattcaatcgcatgcaaccaa |
11491832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 24557486 - 24557617
Alignment:
| Q |
77 |
tttcatcaccttctgcatagttctaaatatgtaagttcttcatcttctctcatcatttgaaaagttaatagggatttagtgaaaaagatgaagctagtgc |
176 |
Q |
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| T |
24557486 |
tttcatcacttgatgcatagttccaaatttgtaagttcttcatct--tctccttatttgaaaagtt-atagagatttagtgaaaaagatgaagcaaatgc |
24557582 |
T |
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| Q |
177 |
tcgttaagtgtttgagaacactctatttttgtactt |
212 |
Q |
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| T |
24557583 |
ttg-taagtgtttgataacactctatttttctactt |
24557617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 10264454 - 10264401
Alignment:
| Q |
22 |
ttggtttagattcaatttattttatgaattgtttataggtgaattaggggtcat |
75 |
Q |
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| T |
10264454 |
ttggtttagattcaatttattttctgaattgtttataggtgaattagggatcat |
10264401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 13180294 - 13180347
Alignment:
| Q |
22 |
ttggtttagattcaatttattttatgaattgtttataggtgaattaggggtcat |
75 |
Q |
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| T |
13180294 |
ttggtttagattgaatttattttatgaattgtttgtaggtgaattggggatcat |
13180347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 10264371 - 10264296
Alignment:
| Q |
77 |
tttcatcaccttctgcatagttctaaatatgtaagttcttcatcttctctcatcatttgaaaagttaatagggatttagt |
156 |
Q |
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| T |
10264371 |
tttcatctccttctgtatagttctaaatatgta---tgctcatcttctcttgttatttgaaaagtt-atagggatttagt |
10264296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 444742 - 444806
Alignment:
| Q |
148 |
ggatttagtgaaaaagatgaagctagtgctcgttaagtgtttgagaacactctatttttgtactt |
212 |
Q |
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| T |
444742 |
ggatttagtgaaaaagaggaagctaatgcttattaaaggtttgagaacactctttttttgtactt |
444806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 444603 - 444665
Alignment:
| Q |
13 |
attctcgagttggtttagattcaatttattttatgaattgtttataggtgaattaggggtcat |
75 |
Q |
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| T |
444603 |
attctggaattggtttcgattgaagttattttatgaattgtttgtaggtgaattggggatcat |
444665 |
T |
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