View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2732_low_1 (Length: 456)
Name: NF2732_low_1
Description: NF2732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2732_low_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 36171665 - 36172102
Alignment:
| Q |
17 |
gaagctgatattgaataaaaactaatagcaaaaacatgctaaattagagagtaagagcaaccttctgacaaaatatctgctaagacggaaattgaaagat |
116 |
Q |
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| T |
36171665 |
gaagctgatattgaataaaaactaatagcaaaaacatgctaaattagagagtaagagcaaccttctgacaaaatatctgctaagacggaaattgaaagat |
36171764 |
T |
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| Q |
117 |
aaaacgaggtacctgtaacaaagtaatcattgtcataatcagacttgatgatgattagaacatcttcgacgcttgaaactgtggagtcattattctgctt |
216 |
Q |
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| T |
36171765 |
aaaacgaggtacctgtaacaaagtaatcattgtcataatcagacttgatgatgattagaacatcttcgacgcttgaaactgtggagtcattattctgctt |
36171864 |
T |
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| Q |
217 |
ctcaatatcgtcgcttaaaacactgcatattaataaattggagtatgattcactcaacaattaataaatgcatatgttgacgattagtgaagaagaatgc |
316 |
Q |
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| T |
36171865 |
ctcaatatcgtcgcttaaaacactgcatattaataaattggagtatgattcactcaacaattaataaatgcatatgttgacgattagtgaagaagaatgc |
36171964 |
T |
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| Q |
317 |
atagtaccctgccagttgtttccaacaacatgaaccactagtcttacacatacaccagatcagacatgacaccggtagtaattt---aagnnnnnnnngt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| || |
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| T |
36171965 |
atagtaccctgccagttgtttccaacaacatgaaccactag-----atcatacaccagatcagacatgacaccggtagtaatttaagaagaaaaaaaagt |
36172059 |
T |
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| Q |
414 |
ggttgacacatatggatactagacacgatattgacgcttaaac |
456 |
Q |
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| T |
36172060 |
ggttgacacatacggatactagacacgacactgacgcttaaac |
36172102 |
T |
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