View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2732_low_11 (Length: 260)
Name: NF2732_low_11
Description: NF2732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2732_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 11491499 - 11491256
Alignment:
| Q |
1 |
ttcaacagcgagagtgactagtgtgccattcttgtttaaggttgtgtcatgtatgcttcttctctttttcctcttctctatatctttcacattttggtgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11491499 |
ttcaacagcgagagtgactagtgtgccattcttgtttaaggttgtgtcatgtatgcttcttctctttttcctcttctctatatctttcacattttggtgg |
11491400 |
T |
|
| Q |
101 |
ataaagtatttttgggcatggctagcaatttgaattggagtctttgtcaccacaaattcttttgaaatatctttccaacgtcccttgccatatttttcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11491399 |
ataaagtatttttgggcatggctagcaatttgaattggagtctttgttaccacaaattcttttgaaatatctttccaacgtcccttgccatatttttcta |
11491300 |
T |
|
| Q |
201 |
tcccctccagaaacaacctatacatcacaaattatagattgaat |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11491299 |
tcccctccagaaacaacctatacatcacaaattatagattgaat |
11491256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38166775 - 38166551
Alignment:
| Q |
1 |
ttcaacagcgagagtgactagtgtgccattcttgtttaaggttgtgtcatgtatgcttcttctctttttcc---tcttctctatatctttcacattttgg |
97 |
Q |
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||||||||||| ||| || | |||| |||||||||||||||||||||| || || ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
38166775 |
ttcaacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaatactttttctctttttctccttcttctctatatctttcacattttgg |
38166676 |
T |
|
| Q |
98 |
tggataaagtatttttgggcatggctagcaatttgaattggagtctttgtcaccacaaattcttttgaaatatctttccaacgtcccttgccatattttt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| |||||||| |||| ||||| |
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| T |
38166675 |
tggataaagtatttttgggcatggctagcaatttgagttggagtttttgtcaccacgaattcttttgaaatatctttccagcgtccctttccatgttttt |
38166576 |
T |
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| Q |
198 |
ctatcccctccagaaacaacctata |
222 |
Q |
| |
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| ||||| || |||||||||||| |
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| T |
38166575 |
tcagccccttcaaaaacaacctata |
38166551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38173105 - 38173329
Alignment:
| Q |
1 |
ttcaacagcgagagtgactagtgtgccattcttgtttaaggttgtgtcatgtatgcttcttctctttttcc---tcttctctatatctttcacattttgg |
97 |
Q |
| |
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||||||||||| ||| || | |||| |||||||||||||||||||||| || || ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
38173105 |
ttcaacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaatactttttctctttttctccttcttctctatatctttcacattttgg |
38173204 |
T |
|
| Q |
98 |
tggataaagtatttttgggcatggctagcaatttgaattggagtctttgtcaccacaaattcttttgaaatatctttccaacgtcccttgccatattttt |
197 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| | |||||| |||| ||||| |
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| T |
38173205 |
tggataaagtatttttgggcatggctagcaatttgagttggagtttttgtcaccacgaattcttttgaaatatctttccagcatccctttccatgttttt |
38173304 |
T |
|
| Q |
198 |
ctatcccctccagaaacaacctata |
222 |
Q |
| |
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| ||||| || |||||||||||| |
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| T |
38173305 |
tcagccccttcaaaaacaacctata |
38173329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38200329 - 38200553
Alignment:
| Q |
1 |
ttcaacagcgagagtgactagtgtgccattcttgtttaaggttgtgtcatgtatgcttcttctctttttcc---tcttctctatatctttcacattttgg |
97 |
Q |
| |
|
||||||||||| ||| || | |||| |||||||||||||||||||||| || || ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
38200329 |
ttcaacagcgacagtaaccaatgtgtcattcttgtttaaggttgtgtcgtgaatactttttctctttttctccttcttctctatatctttcacattttgg |
38200428 |
T |
|
| Q |
98 |
tggataaagtatttttgggcatggctagcaatttgaattggagtctttgtcaccacaaattcttttgaaatatctttccaacgtcccttgccatattttt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| | |||||| |||| ||||| |
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| T |
38200429 |
tggataaagtatttttgggcatggctagcaatttgagttggagtttttgtcaccacgaattcttttgaaatatctttccagcatccctttccatgttttt |
38200528 |
T |
|
| Q |
198 |
ctatcccctccagaaacaacctata |
222 |
Q |
| |
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| ||||| || |||||||||||| |
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| T |
38200529 |
tcagccccttcaaaaacaacctata |
38200553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 11484641 - 11484406
Alignment:
| Q |
13 |
agtgactagtgtgccattcttgtttaaggttgtgtcatgtatgcttcttctctttttcctcttctctatatctttcacattttggtgg---ataaagtat |
109 |
Q |
| |
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|||||||| |||| |||| |||||||||||| |||| || || ||||||||||||||| |||||||||| ||||| || |||||||| | ||||||| |
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| T |
11484641 |
agtgactattgtgtcattattgtttaaggttatgtcgtgaatacttcttctctttttcttcttctctatttctttggcagtttggtggtgaacaaagtat |
11484542 |
T |
|
| Q |
110 |
ttttgggcatggctagcaatttgaattggagtctttgtcaccacaaattcttttgaaatatctttccaacgtcccttgccatatttttctatcccctcca |
209 |
Q |
| |
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||||| ||||| |||||||||||| ||||||| ||||| |||||||||| ||||||||||||||||||||||| | |||| ||||| | ||||| | |
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| T |
11484541 |
ttttgagcatgactagcaatttgagttggagtttttgttttcacaaattctcttgaaatatctttccaacgtcccctaccatgttttttcaccccctgta |
11484442 |
T |
|
| Q |
210 |
gaaacaacctatacatcacaaattatagattgaatt |
245 |
Q |
| |
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||||||||||| | |||||||| |||| ||| |||| |
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| T |
11484441 |
gaaacaacctacatatcacaaaatataaattcaatt |
11484406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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