View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2732_low_16 (Length: 237)
Name: NF2732_low_16
Description: NF2732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2732_low_16 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 41754562 - 41754343
Alignment:
| Q |
18 |
atgtatgtgttattaaatgcagcttcctttctgaaaattgaaacccctacaccatatgcattgagaaattcttcaactctacaaaatggaatcaactttg |
117 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41754562 |
atgtatgtgttattacatgcagcttcctttttgaaaattgaaacccctgcaccatatgcattgagaaattcctcaactctacaaaatggaatcaactttg |
41754463 |
T |
|
| Q |
118 |
cttttggaggaacaggtgttttccaaacattgaaggtgaaggatggaccaaatatgactgtccaaattgactcacttgagaagttaattcnnnnnnntgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41754462 |
cttttggaggaacaggtgttttccaaacattgaaggtgaaggatggaccaaatatgactgtccaaattgactcacttgagaagttaattcaaaaaaatgt |
41754363 |
T |
|
| Q |
218 |
ctataccaaacaagaccttc |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41754362 |
ctataccaaacaagaccttc |
41754343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 41758789 - 41758576
Alignment:
| Q |
16 |
gtatgtatgtgttattaaatgcagcttcctttctgaaaattgaaacccctacaccatatgcattgagaaattcttcaactctacaaaatggaatcaactt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41758789 |
gtatgtatgtgttattaaatgcagcttcctttctgaaaattaaaacccctacaccatatgcattgagaaattcctcaactctacaaaatggaatcaactt |
41758690 |
T |
|
| Q |
116 |
tgcttttggaggaacaggtgttttccaaacattgaaggtgaaggatggaccaaatatgactgtccaaattgactcacttgagaagttaattcnnnnnnnt |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||| |||| | |
|
|
| T |
41758689 |
tgcttatggaggaacaggtgttttccaaacat------tgaccaatggaccaaacatgactgttcaaattgactcacttgagaagctaatcaaacaaaat |
41758596 |
T |
|
| Q |
216 |
gtctataccaaacaagacct |
235 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
41758595 |
gtctataccaaacaagacct |
41758576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 41748140 - 41747975
Alignment:
| Q |
34 |
atgcagcttcctttctgaaaattgaaacccctacaccatatgcattgagaaattcttcaactctacaaaatggaatcaactttgcttttggaggaacagg |
133 |
Q |
| |
|
||||||||||||||||||| || || |||||| ||||||| |||||| || || ||| |||||| |||| || |||||||| | |||||| || || |
|
|
| T |
41748140 |
atgcagcttcctttctgaatataaaatcccctagaccatattcattgaagaaatcctcagaactacaatatggcatgaactttgcctatggagggactgg |
41748041 |
T |
|
| Q |
134 |
tgttttccaaacattgaaggtgaaggatggaccaaatatgactgtccaaattgactcacttgagaagttaat |
205 |
Q |
| |
|
||||||||| || |||| | |||||||||| |||||||||||||| ||| || ||||||||||||| |
|
|
| T |
41748040 |
tgttttccatactttgattg------atggaccaaacatgactgtccaaatcgacacatttgagaagttaat |
41747975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 41734471 - 41734417
Alignment:
| Q |
34 |
atgcagcttcctttctgaaaattgaaacccctacaccatatgcattgagaaattc |
88 |
Q |
| |
|
|||||||||||||| ||||||| || |||| ||||| ||||||||||||||||| |
|
|
| T |
41734471 |
atgcagcttcctttttgaaaataaaatcccccacaccgtatgcattgagaaattc |
41734417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University