View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2732_low_7 (Length: 344)
Name: NF2732_low_7
Description: NF2732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2732_low_7 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 344
Target Start/End: Complemental strand, 11491833 - 11491503
Alignment:
| Q |
14 |
aaattaattatatattatattcaattgaatgaattctactatatcaaactgtcaataaaattacctatttttaataggaaaaaattaactttgaactttt |
113 |
Q |
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| T |
11491833 |
aaattaattatatattatattcaattgaatgaattctactatatcaaactgtcaataaaattacctatttttaataggaaaaaattaactttgaactttt |
11491734 |
T |
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| Q |
114 |
ttattggactaaatacgaagcataaatgtaattagctgtgctgaagctctagcgtcgaagttcttttgccaataagtcgcgcatcttctcaagtttctct |
213 |
Q |
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| T |
11491733 |
ttattggactaaatacgaagcataaatgtaattagatgtgctgaagctctagcgtcgaagttcttttgccaataagtcgcgcatcttctcaagtttctct |
11491634 |
T |
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| Q |
214 |
ttatcaggaattgtagaaccgattggaaaaaccaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtct |
313 |
Q |
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| T |
11491633 |
ttatcaggaattgtagaaccgattgaaaaaagcaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtct |
11491534 |
T |
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| Q |
314 |
cactttgttgctcgactgaaggaatctcatc |
344 |
Q |
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| T |
11491533 |
cactttgttgctcgactgaaggaatctcatc |
11491503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 219 - 344
Target Start/End: Complemental strand, 38166904 - 38166782
Alignment:
| Q |
219 |
aggaattgtagaaccgattggaaaaaccaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtctcactt |
318 |
Q |
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| T |
38166904 |
aggaattgtagaactgattggcag---caagcacaacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactt |
38166808 |
T |
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| Q |
319 |
tgttgctcgactgaaggaatctcatc |
344 |
Q |
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| T |
38166807 |
tgtagctcaactgaaggaatctcatc |
38166782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 219 - 344
Target Start/End: Original strand, 38172976 - 38173098
Alignment:
| Q |
219 |
aggaattgtagaaccgattggaaaaaccaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtctcactt |
318 |
Q |
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| T |
38172976 |
aggaattgtagaactgattggcag---caagcacaacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactt |
38173072 |
T |
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| Q |
319 |
tgttgctcgactgaaggaatctcatc |
344 |
Q |
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| T |
38173073 |
tgtagctcaactgaaggaatctcatc |
38173098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 219 - 344
Target Start/End: Original strand, 38200200 - 38200322
Alignment:
| Q |
219 |
aggaattgtagaaccgattggaaaaaccaagcacaacataggagaaatctcattttgttgtgtttgtgtctgttgcattccttgaggaggagtctcactt |
318 |
Q |
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| T |
38200200 |
aggaattgtagaactgattggcag---caagcacaacataggagaaatctcattctgttgtgtttgtgtctgttgcattccttgaggaggaatcacactt |
38200296 |
T |
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| Q |
319 |
tgttgctcgactgaaggaatctcatc |
344 |
Q |
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| T |
38200297 |
tgtagctcaactgaaggaatctcatc |
38200322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 38167099 - 38167030
Alignment:
| Q |
171 |
aagttcttttgccaataagtcgcgcatcttctcaagtttctctttatcaggaattgtagaaccgattgga |
240 |
Q |
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| T |
38167099 |
aagttcttttgccaacaagttgcacatcttctcaagtttgttcatatcaggaagtgtagaaccgattgga |
38167030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 38172781 - 38172850
Alignment:
| Q |
171 |
aagttcttttgccaataagtcgcgcatcttctcaagtttctctttatcaggaattgtagaaccgattgga |
240 |
Q |
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| T |
38172781 |
aagttcttttgccaacaagttgcacatcttctcaagtttgttcatatcaggaagtgtagaaccgattgga |
38172850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 38200005 - 38200074
Alignment:
| Q |
171 |
aagttcttttgccaataagtcgcgcatcttctcaagtttctctttatcaggaattgtagaaccgattgga |
240 |
Q |
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| T |
38200005 |
aagttcttttgccaacaagttgcacatcttctcaagtttgttcatatcaggaagtgtagaaccgattgga |
38200074 |
T |
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