View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2732_low_8 (Length: 308)
Name: NF2732_low_8
Description: NF2732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2732_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 19 - 301
Target Start/End: Original strand, 31104026 - 31104308
Alignment:
| Q |
19 |
gaaataccgttgagacaaaaaacaccgtcgcaactaccataaatttcaattcttgcaacgtcttgaggaaacaaagatttgatgggaattgatttctgat |
118 |
Q |
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| T |
31104026 |
gaaatacctttgagacaaaaaacaccgtcgcaactaccataaatttcaattcttgcaacgtcttgaggaaacaaagatttgatgggaattgatttctgat |
31104125 |
T |
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| Q |
119 |
cattgcctccatcacagaagataaacttcatgttaggtgcgttttgaaggattagaagacgatttcttctagtagcaaaatagggacttttgatgatatt |
218 |
Q |
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| T |
31104126 |
cattgcctccatcacagaagataaacttcatgttaggtgcgttttgaaggattagaagacgatttcttctagtagcaaaatagggacttttgatgatatt |
31104225 |
T |
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| Q |
219 |
gttccatgatttttgaacacatttgaaacgcgacaaagattttgttggtagccgcaacaatatctctatctccaattcatctc |
301 |
Q |
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| T |
31104226 |
gttccatgatttttgaacacatttgaaacgcgacaaagattttgttggtagccgcaacaatatctctatctccaattcttctc |
31104308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 287
Target Start/End: Complemental strand, 31106804 - 31106699
Alignment:
| Q |
182 |
ttcttctagtagcaaaatagggacttttgatgatattgttccatgatttttgaacacatttgaaacgcgacaaagattttgttggtagccgcaacaatat |
281 |
Q |
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| T |
31106804 |
ttcttctagtcacaaaatagggagttttaatgagattgttccatgatctttgaacacatttgctacgcatcaatgattttgctggtagccgcaataatat |
31106705 |
T |
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| Q |
282 |
ctctat |
287 |
Q |
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|||||| |
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| T |
31106704 |
ctctat |
31106699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 101
Target Start/End: Complemental strand, 31106965 - 31106892
Alignment:
| Q |
28 |
ttgagacaaaaaacaccgtcgcaactaccataaatttcaattcttgcaacgtcttgaggaaacaaagatttgat |
101 |
Q |
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| T |
31106965 |
ttgagacaaaaaaaaccgttgcaactaccatacgttttgattcttgctaggtatttagcaaacaaagatttgat |
31106892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 38956747 - 38956831
Alignment:
| Q |
206 |
ttttgatgatattgttccatgatttttgaacacatttgaaacgcgacaaagattttgttggtagccgcaacaatatctctatctc |
290 |
Q |
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| T |
38956747 |
ttttaatgagattgttccatgatctttgaacacatttgcaacacatcagtgattttgctggtagccgcgacaatatttctctctc |
38956831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 245
Target Start/End: Complemental strand, 1177700 - 1177649
Alignment:
| Q |
194 |
caaaatagggacttttgatgatattgttccatgatttttgaacacatttgaa |
245 |
Q |
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| T |
1177700 |
caaaagagggacttttgatcagaatgttccatgatttttcaacacatttgaa |
1177649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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