View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2733_high_13 (Length: 320)
Name: NF2733_high_13
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2733_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 320
Target Start/End: Original strand, 3717311 - 3717614
Alignment:
| Q |
17 |
atgtttactaaaatcattaaacatgtattgaaggaggcaatgtggcttcaccaaatagattcatctttgatgggaaattgggaatgaggtaacttgtatg |
116 |
Q |
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| T |
3717311 |
atgtttactaaaatcattaaacatgtattgaaggaggcaatgtggcttcaccaaatagattcatctttgatgggaaattgggaatgaggtaacttgtatg |
3717410 |
T |
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| Q |
117 |
tatgtggttgaacatgtaaagttggataaagatccgacaaaatttgttgtataattgattcgcttcaagtagtcgtttaaacttgttgttgaagatgaga |
216 |
Q |
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| T |
3717411 |
taagtggttgaacatgtaaagttggataaacatccgacaaaatttgttgtataattgattcgcttcaagtagtcgtttaaatttgttgttgaagatgaga |
3717510 |
T |
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| Q |
217 |
aaatcacaaaaggaggatttaattgtggtgtatttgaaattatttccgtgttctatgaaaacatatttagttaaaataaaatatattctaagagaaatgt |
316 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
3717511 |
aaatcacaaaaggagaatttaattgtggtgtatttgaaattttttccgtgttctatgaaaacatatttagttaaaataaaacatcttctaagagaaatgt |
3717610 |
T |
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| Q |
317 |
gaac |
320 |
Q |
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|||| |
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| T |
3717611 |
gaac |
3717614 |
T |
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