View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2733_high_15 (Length: 273)
Name: NF2733_high_15
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2733_high_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 41822353 - 41822612
Alignment:
| Q |
15 |
taggtacatggaattatgaaaagaacatcacaaacaactactgaaagaacnnnnnnn-tgaactaaaaatacgaggtaaagttcatcatacataacagct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41822353 |
taggtacatggaattatgaaaagaacatcacaaacaactactgaaagaacaaaaaaaatgaactaaaaatacgaggtaaagttcatcatacataacagct |
41822452 |
T |
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| Q |
114 |
catcactctgcatcacctaaaaatacaattgctaactagaggaattagaacttaaatttcaaaatcattaaacacaataattgaaaatatgtagaggaaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41822453 |
catcactctgcatcacctaaaaatacaattgctaactagaggaattagaacttaaatttcaaaatcattaaacacaataattgaaaatatgtagaggaaa |
41822552 |
T |
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| Q |
214 |
taggacaaaaaatggtatacctagcatccttgaagaaagtgcaaattggtattctcatcc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41822553 |
taggacaaaaaatggtatacctagcatccttgaagaaagtgcaaattggtattctcatcc |
41822612 |
T |
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