View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2733_high_16 (Length: 252)
Name: NF2733_high_16
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2733_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 45345742 - 45345513
Alignment:
| Q |
16 |
catgcatatacttggaagaaggggtaatgttgcactgaattatttaggaaggtatgttcatataaaaaattctactaagaatcc--nnnnnnnnnnngac |
113 |
Q |
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| T |
45345742 |
catgcatatacttggaagaaggggtaatgttgcactgaattatttaggaaggtatgttcatataaaaaattctactaagaatccattttttttttttgac |
45345643 |
T |
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| Q |
114 |
aaagctaagaatccatttgaatgttatggttggtgatagcacgaatatcataaagtnnnnnnnnnnnnnnntacacgtggttttaacaaacattagatta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45345642 |
aaagctaagaatccatttgaatgttatggttggtgatagcacgaatatcataaagtaaaaaaaataaaaaatacacgtggttttaacaaacattagatta |
45345543 |
T |
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| Q |
214 |
tagttaatcttgttaaaaaagtatattctt |
243 |
Q |
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|||| ||||||||||||||||||||||||| |
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| T |
45345542 |
tagtcaatcttgttaaaaaagtatattctt |
45345513 |
T |
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