View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2733_high_18 (Length: 250)
Name: NF2733_high_18
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2733_high_18 |
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| [»] scaffold0419 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0419 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 4651 - 4889
Alignment:
| Q |
13 |
aatatactttctgaaagtttaaggtatagttnnnnnnnn-cggagttacagagattttctcnnnnnnnaatgtcttttggaaccatgcatttgtagtgtt |
111 |
Q |
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| T |
4651 |
aatatactttctgaaagtttaaggtatagttaaaaaaaaacggagttacagagatttgctctttttttaatgtcttttggaaccatgcatttgtagtgtt |
4750 |
T |
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| Q |
112 |
ccatcagtaataatatattcttttgcatgattaatttgatttttccgcctgactctttcaaagttgcagtagaatttaacttttctatagtctagcaaga |
211 |
Q |
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| T |
4751 |
ccatcagtaataatatattcttttgcatgattaatttgatttttccgcccgactctttcaaagttgcagtagaatttaacttttctatagtctagcaaga |
4850 |
T |
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| Q |
212 |
attgctaaaaaagaaattcaagcaaaaatagtcttattt |
250 |
Q |
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| T |
4851 |
attgctaaaaaagaaattcaagcaaaaatagtcttattt |
4889 |
T |
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Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 28837677 - 28837915
Alignment:
| Q |
13 |
aatatactttctgaaagtttaaggtatagttnnnnnnnncggagttacagagattttctcnnnnnnnaatgtcttttggaaccatgcatttgtagtgttc |
112 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
28837677 |
aatatactttctgaaagtttaaggtatagttaaaaaaaacggagttacagagatttgctctttttttaatgtcttttggaaccatgcatttgtagtgttc |
28837776 |
T |
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| Q |
113 |
catcagtaataatatattcttttgcatgattaattt-gatttttccgcctgactctttcaaagttgcagtagaatttaacttttctatagtctagcaaga |
211 |
Q |
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| T |
28837777 |
catcagtaatgatatattcttttgcatgattaattttgatttttccgcccgactctttcaaagttgcagtagaatttaacttttctatagtctagcaaga |
28837876 |
T |
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| Q |
212 |
attgctaaaaaagaaattcaagcaaaaatagtcttattt |
250 |
Q |
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| T |
28837877 |
attgctaaaaaagaaattcaagcataaatagtcttattt |
28837915 |
T |
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