View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2733_high_2 (Length: 588)
Name: NF2733_high_2
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2733_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 300
Target Start/End: Original strand, 26477685 - 26477973
Alignment:
| Q |
12 |
atgaacaccctatcaattcgacttatcgccacccctttagcatgataccaagtgaatttacgacccaaaggattaacatcttccaaatctaacgcggtca |
111 |
Q |
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| T |
26477685 |
atgaacaccctatcaattcgacttatcgccaccccattagcatgataccaagtgaatttacgacccaaagaattaacatcttccaaatctaacgcggtca |
26477784 |
T |
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| Q |
112 |
tgaaccaattaaaaagattcctctccaaaatttgactcgaagtgtcctccatttttataccccttctttcctcactactactcaccacattaaaattacc |
211 |
Q |
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| T |
26477785 |
agaaccaattaaaaagattcctctccaaaatttgactcgaagtgtcctccacatttacaccccttctttcctctctactactcaccacattaaaattacc |
26477884 |
T |
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| Q |
212 |
cataatgcaccacactccatgccccaattcctctctactgtttgttttcttaaaaagaaaaattgttataaaggaaagcagaatcacat |
300 |
Q |
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| T |
26477885 |
cataatgcaccacactccatgccccaattcctctctactgtttgttttcttaaaaagaaaaattgttataaaggaaagcagaatcacat |
26477973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 404 - 573
Target Start/End: Original strand, 26478077 - 26478250
Alignment:
| Q |
404 |
gttccaaaccatcatgtcttattttaagagaaaaccacatttttatacaactaagaaataaagcaatttactacaaaccaaagcaacaataacagcagc- |
502 |
Q |
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| T |
26478077 |
gttccaaaccatcatgtcttattttaagagaaaaccacatttttatacaacaaagaaataaagcaatttactacaaaccaaagcaacaataacagcaacc |
26478176 |
T |
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| Q |
503 |
---ctcattacaattattgaagaattaattaataatagcagaaaacaacaatagcagcccccattgtaacttac |
573 |
Q |
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| T |
26478177 |
tagctcattacaattattgaagaattaattaataatagcagaaaacaacaatagcatccctcattgtaacttac |
26478250 |
T |
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