View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2733_high_3 (Length: 515)
Name: NF2733_high_3
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2733_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 497
Target Start/End: Original strand, 3059345 - 3059828
Alignment:
| Q |
14 |
caaaggtgaaaagaaatttgttggagagcactctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaag |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059345 |
caaaggtgaaaagaaatttgttggagagcactctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaag |
3059444 |
T |
|
| Q |
114 |
gaaagtgattgttggtacaaaggaaaaacgccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagc |
213 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059445 |
gaaagtgattgttggtacaaaggaaaaacaccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagc |
3059544 |
T |
|
| Q |
214 |
agcaccaaaatcaacaaaatcatacttctcaaaaggcaaatgtaattgaaattgaagatagtgaagaactcttgttcatggccaatactacaaggagttc |
313 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059545 |
agcaccaaaatcaacaaaatcatacttctcaaaaggcaaatgtaactgaaattgaagatagtgaagaactcttgttcatggccaatactacaaggagttc |
3059644 |
T |
|
| Q |
314 |
ggaggatggagacacatggtttattgatagtggctgcacacaacacatgactagcaaaccagaactgttttcagagatcaaacccgctgcaggatctgta |
413 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3059645 |
ggaggatggagacacatggtttattgatagtggctgcacacaacacatgactagcaaaccagaactgttttcagagatcaaacccgctgcaggatctgta |
3059744 |
T |
|
| Q |
414 |
aagattggaaatggacagaaagttgccatcacaggtagaggaacggtgaaaattcacactgcaacaagtattaaatacatttct |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3059745 |
aagattggaaatggacagaaagttgccatcacaggtagaggaacggtgaaaattcacactgcaacaggtattaaatacatttct |
3059828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 14 - 497
Target Start/End: Complemental strand, 17442855 - 17442372
Alignment:
| Q |
14 |
caaaggtgaaaagaaatttgttggagagcactctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442855 |
caaaggtgaaaagaaatttgttggagagcactctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaag |
17442756 |
T |
|
| Q |
114 |
gaaagtgattgttggtacaaaggaaaaacgccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442755 |
gaaagtgattgttggtacaaaggaaaaacaccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagc |
17442656 |
T |
|
| Q |
214 |
agcaccaaaatcaacaaaatcatacttctcaaaaggcaaatgtaattgaaattgaagatagtgaagaactcttgttcatggccaatactacaaggagttc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17442655 |
agcaccaaaatcaacaaaatcatacttctcaaaaggcaaatgtaactgaaattgaagatagtgaagaactcttgttcatggccaatactacaaggagttc |
17442556 |
T |
|
| Q |
314 |
ggaggatggagacacatggtttattgatagtggctgcacacaacacatgactagcaaaccagaactgttttcagagatcaaacccgctgcaggatctgta |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17442555 |
ggaggatggagacacatggtttattgatagtggctgcacacaacacatgactagcaaaccagaactgttttcagagatcaaacccgctgcaggatctgta |
17442456 |
T |
|
| Q |
414 |
aagattggaaatggacagaaagttgccatcacaggtagaggaacggtgaaaattcacactgcaacaagtattaaatacatttct |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17442455 |
aagattggaaatggacagaaagttgccatcacaggtagaggaacggtgaaaattcacactgcaacaggtattaaatacatttct |
17442372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 14 - 497
Target Start/End: Original strand, 4873988 - 4874471
Alignment:
| Q |
14 |
caaaggtgaaaagaaatttgttggagagcactctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4873988 |
caaaggtgaaaagaaatttgttggagagcactctgggaaagatacaaagaagaaggaaagatttccaaaatgtggaatttgcaaaagaaccagccacaag |
4874087 |
T |
|
| Q |
114 |
gaaagtgattgttggtacaaaggaaaaacgccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4874088 |
gaaagtgattgttggtacaaaggaaaaaaaccaccaccatttcaatgtagatactgcaataaaactgggcatattgagaggttttgtaggctgaaacagc |
4874187 |
T |
|
| Q |
214 |
agcaccaaaatcaacaaaatcatacttctcaaaaggcaaatgtaattgaaattgaagatagtgaagaactcttgttcatggccaatactacaaggagttc |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4874188 |
agcaccaaaatcaacaaaatcatacttctcaaaaggcaaatgtaactgaaattgaagatagtgaagaactcttgttcatggccaatactacaaggagttc |
4874287 |
T |
|
| Q |
314 |
ggaggatggagacacatggtttattgatagtggctgcacacaacacatgactagcaaaccagaactgttttcagagatcaaacccgctgcaggatctgta |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
4874288 |
ggaggatggagacacatggtttattgatagtggctgcacacaacacatgactagcaaaccaaaactgttttcagagatcaaacccgctgcaggatctgta |
4874387 |
T |
|
| Q |
414 |
aagattggaaatggacagaaagttgccatcacaggtagaggaacggtgaaaattcacactgcaacaagtattaaatacatttct |
497 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
4874388 |
aagattggaaatggacagaaagttgccatcacaggtagaggaacagtgaaaattcacactgcaacaggtattaaatacatttct |
4874471 |
T |
|
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