View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2733_high_9 (Length: 421)

Name: NF2733_high_9
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2733_high_9
NF2733_high_9
[»] chr3 (39 HSPs)
chr3 (204-416)||(9774488-9774700)
chr3 (18-186)||(9762752-9762920)
chr3 (20-186)||(9775963-9776129)
chr3 (236-403)||(17023740-17023908)
chr3 (236-407)||(11848287-11848458)
chr3 (236-378)||(11577196-11577339)
chr3 (240-378)||(8685290-8685430)
chr3 (204-288)||(9762161-9762245)
chr3 (242-376)||(8532398-8532535)
chr3 (264-379)||(17051263-17051379)
chr3 (236-403)||(40846977-40847146)
chr3 (264-377)||(22039366-22039481)
chr3 (264-376)||(13418920-13419033)
chr3 (240-379)||(17775289-17775430)
chr3 (240-379)||(19076590-19076731)
chr3 (228-362)||(14347540-14347676)
chr3 (204-282)||(27992031-27992109)
chr3 (228-380)||(11826855-11827008)
chr3 (232-415)||(25055516-25055706)
chr3 (236-361)||(3212959-3213086)
chr3 (264-382)||(42243986-42244105)
chr3 (131-186)||(20354700-20354755)
chr3 (238-382)||(3280339-3280487)
chr3 (236-362)||(11399382-11399510)
chr3 (264-387)||(17210114-17210234)
chr3 (305-385)||(27407784-27407864)
chr3 (309-415)||(27991928-27992035)
chr3 (131-186)||(37311655-37311710)
chr3 (101-186)||(54362012-54362097)
chr3 (236-362)||(36079566-36079694)
chr3 (131-186)||(23071970-23072025)
chr3 (236-403)||(6237362-6237529)
chr3 (238-362)||(19566455-19566581)
chr3 (275-362)||(47975343-47975432)
chr3 (131-186)||(3455874-3455929)
chr3 (236-337)||(37977792-37977895)
chr3 (131-186)||(53683949-53684004)
chr3 (236-340)||(13605541-13605647)
chr3 (131-173)||(41666926-41666968)
[»] chr4 (31 HSPs)
chr4 (218-416)||(17169268-17169466)
chr4 (218-416)||(17174828-17175026)
chr4 (236-378)||(25190685-25190828)
chr4 (236-382)||(5675970-5676118)
chr4 (232-377)||(12345402-12345549)
chr4 (240-362)||(8561779-8561902)
chr4 (236-376)||(11921891-11922032)
chr4 (240-379)||(33330453-33330594)
chr4 (228-361)||(9857702-9857837)
chr4 (236-382)||(10731636-10731783)
chr4 (236-382)||(10945405-10945552)
chr4 (236-403)||(20058589-20058754)
chr4 (263-386)||(31594408-31594530)
chr4 (303-361)||(9192810-9192868)
chr4 (236-378)||(16953367-16953512)
chr4 (264-387)||(38652687-38652810)
chr4 (100-186)||(2554162-2554248)
chr4 (262-384)||(43701010-43701131)
chr4 (236-379)||(11902063-11902210)
chr4 (236-362)||(39042949-39043077)
chr4 (131-186)||(50685604-50685659)
chr4 (285-382)||(11325495-11325592)
chr4 (132-186)||(13529361-13529415)
chr4 (314-401)||(13882952-13883037)
chr4 (130-186)||(13902024-13902080)
chr4 (110-186)||(14134863-14134939)
chr4 (315-362)||(3355850-3355897)
chr4 (219-302)||(29367518-29367601)
chr4 (131-186)||(33111967-33112022)
chr4 (316-362)||(13622876-13622922)
chr4 (314-370)||(24493535-24493591)
[»] chr7 (48 HSPs)
chr7 (218-416)||(678906-679110)
chr7 (218-415)||(15523509-15523710)
chr7 (231-416)||(12348467-12348653)
chr7 (219-382)||(38877887-38878057)
chr7 (236-362)||(4460256-4460383)
chr7 (232-384)||(11483295-11483448)
chr7 (237-377)||(30063408-30063549)
chr7 (236-379)||(4465229-4465373)
chr7 (236-362)||(17912085-17912212)
chr7 (243-379)||(4541675-4541813)
chr7 (240-378)||(4982598-4982737)
chr7 (266-403)||(8837098-8837234)
chr7 (236-361)||(1614415-1614542)
chr7 (236-362)||(39271658-39271786)
chr7 (240-362)||(17206016-17206137)
chr7 (236-362)||(48713949-48714076)
chr7 (236-384)||(3375950-3376102)
chr7 (267-382)||(8779890-8780003)
chr7 (96-186)||(42121298-42121386)
chr7 (236-341)||(16896745-16896851)
chr7 (242-358)||(4256078-4256195)
chr7 (267-382)||(8786729-8786842)
chr7 (131-186)||(29724368-29724423)
chr7 (132-186)||(9658337-9658391)
chr7 (236-379)||(16487824-16487970)
chr7 (236-337)||(20627423-20627525)
chr7 (236-337)||(20631314-20631416)
chr7 (236-337)||(20635922-20636024)
chr7 (236-337)||(20637794-20637896)
chr7 (232-362)||(8521619-8521751)
chr7 (238-294)||(10310991-10311047)
chr7 (305-385)||(46274667-46274747)
chr7 (315-362)||(826851-826898)
chr7 (315-362)||(828862-828909)
chr7 (219-258)||(3194304-3194343)
chr7 (316-386)||(13435430-13435501)
chr7 (236-362)||(39389237-39389363)
chr7 (228-302)||(8236037-8236111)
chr7 (316-362)||(48340048-48340094)
chr7 (236-285)||(11994832-11994881)
chr7 (264-416)||(15706649-15706807)
chr7 (315-382)||(4313813-4313881)
chr7 (275-377)||(6711948-6712050)
chr7 (264-362)||(9005112-9005211)
chr7 (236-362)||(23292210-23292338)
chr7 (275-337)||(24058213-24058277)
chr7 (275-359)||(25033843-25033925)
chr7 (264-362)||(25180664-25180764)
[»] chr8 (24 HSPs)
chr8 (218-385)||(24220990-24221158)
chr8 (236-384)||(18008604-18008753)
chr8 (240-370)||(26854577-26854708)
chr8 (230-379)||(21319919-21320071)
chr8 (236-403)||(6280250-6280417)
chr8 (236-403)||(26013434-26013603)
chr8 (240-382)||(14161572-14161715)
chr8 (236-361)||(1989949-1990076)
chr8 (240-370)||(24342388-24342519)
chr8 (246-385)||(19791664-19791805)
chr8 (240-374)||(23221088-23221221)
chr8 (284-384)||(15636558-15636656)
chr8 (264-378)||(6570060-6570177)
chr8 (263-362)||(9318367-9318468)
chr8 (340-403)||(18959789-18959852)
chr8 (315-362)||(22818786-22818833)
chr8 (236-362)||(24967756-24967884)
chr8 (315-362)||(24035266-24035313)
chr8 (228-391)||(23456077-23456241)
chr8 (104-186)||(42486514-42486595)
chr8 (131-180)||(17958691-17958739)
chr8 (236-285)||(29004135-29004184)
chr8 (104-164)||(5957096-5957156)
chr8 (264-379)||(15760109-15760228)
[»] chr5 (30 HSPs)
chr5 (204-392)||(24166730-24166918)
chr5 (219-380)||(23114740-23114901)
chr5 (241-379)||(16677584-16677724)
chr5 (264-370)||(20738872-20738978)
chr5 (240-379)||(12411032-12411174)
chr5 (240-408)||(22171291-22171465)
chr5 (218-289)||(23029104-23029175)
chr5 (236-378)||(20724292-20724437)
chr5 (236-362)||(17408189-17408317)
chr5 (236-362)||(21833428-21833556)
chr5 (227-378)||(22949064-22949219)
chr5 (236-362)||(24165755-24165881)
chr5 (305-379)||(23029033-23029106)
chr5 (238-362)||(23435827-23435953)
chr5 (238-362)||(23447194-23447320)
chr5 (267-356)||(31415014-31415104)
chr5 (264-384)||(31757576-31757695)
chr5 (264-362)||(20968268-20968368)
chr5 (236-362)||(21382779-21382907)
chr5 (228-300)||(22942855-22942927)
chr5 (264-414)||(21999919-22000077)
chr5 (305-362)||(25485918-25485975)
chr5 (131-186)||(141322-141377)
chr5 (275-391)||(12322813-12322931)
chr5 (344-403)||(19890350-19890409)
chr5 (264-386)||(20915421-20915547)
chr5 (131-186)||(29429621-29429676)
chr5 (263-379)||(34222555-34222672)
chr5 (104-186)||(36187500-36187582)
chr5 (236-301)||(20168996-20169061)
[»] scaffold0014 (1 HSPs)
scaffold0014 (227-380)||(168685-168838)
[»] chr2 (35 HSPs)
chr2 (204-380)||(24370884-24371061)
chr2 (232-378)||(24322292-24322439)
chr2 (240-403)||(19012430-19012594)
chr2 (264-382)||(24365759-24365878)
chr2 (235-379)||(21131502-21131649)
chr2 (240-358)||(16440279-16440398)
chr2 (232-378)||(19121554-19121701)
chr2 (236-384)||(539697-539844)
chr2 (236-384)||(24609509-24609658)
chr2 (236-408)||(20852626-20852800)
chr2 (236-391)||(24177126-24177283)
chr2 (237-378)||(29576790-29576935)
chr2 (228-300)||(11391600-11391672)
chr2 (228-300)||(11408261-11408333)
chr2 (263-415)||(22558236-22558391)
chr2 (236-382)||(23704780-23704927)
chr2 (236-361)||(44998746-44998871)
chr2 (264-379)||(41653057-41653171)
chr2 (236-382)||(21343976-21344123)
chr2 (264-382)||(25858031-25858147)
chr2 (101-186)||(929007-929092)
chr2 (236-362)||(23341065-23341193)
chr2 (131-186)||(15215514-15215569)
chr2 (294-396)||(31590003-31590102)
chr2 (236-379)||(30948699-30948843)
chr2 (131-186)||(3903710-3903763)
chr2 (264-362)||(16133659-16133759)
chr2 (236-362)||(29563693-29563821)
chr2 (315-362)||(25038378-25038425)
chr2 (236-361)||(32140401-32140528)
chr2 (242-378)||(36684807-36684946)
chr2 (139-185)||(12776260-12776306)
chr2 (131-185)||(34504188-34504242)
chr2 (275-378)||(25803238-25803343)
chr2 (265-376)||(29952101-29952211)
[»] scaffold0855 (1 HSPs)
scaffold0855 (204-385)||(3936-4119)
[»] scaffold0847 (1 HSPs)
scaffold0847 (204-385)||(4101-4284)
[»] chr6 (59 HSPs)
chr6 (227-376)||(20225573-20225722)
chr6 (227-376)||(22119557-22119706)
chr6 (204-377)||(31964962-31965133)
chr6 (222-408)||(24392305-24392494)
chr6 (232-378)||(20464871-20465017)
chr6 (238-379)||(19695913-19696056)
chr6 (240-377)||(26822361-26822500)
chr6 (227-379)||(15470607-15470760)
chr6 (243-376)||(17793421-17793556)
chr6 (238-379)||(18974159-18974301)
chr6 (240-376)||(23346623-23346761)
chr6 (228-403)||(12659863-12660039)
chr6 (227-376)||(20221678-20221823)
chr6 (227-376)||(22115662-22115807)
chr6 (264-370)||(18627961-18628068)
chr6 (263-379)||(15172751-15172869)
chr6 (243-382)||(14893938-14894077)
chr6 (243-376)||(19612179-19612314)
chr6 (264-362)||(25922843-25922941)
chr6 (264-376)||(19994127-19994240)
chr6 (264-382)||(26018488-26018604)
chr6 (264-414)||(26139192-26139350)
chr6 (236-362)||(5399727-5399855)
chr6 (236-361)||(22600814-22600941)
chr6 (264-362)||(23523403-23523502)
chr6 (264-362)||(28733597-28733696)
chr6 (240-382)||(20435748-20435888)
chr6 (264-379)||(25338675-25338792)
chr6 (264-382)||(25508119-25508235)
chr6 (264-362)||(26157861-26157958)
chr6 (264-391)||(28079929-28080058)
chr6 (240-379)||(23509837-23509978)
chr6 (236-355)||(18993662-18993782)
chr6 (264-377)||(25030578-25030693)
chr6 (236-361)||(26474451-26474578)
chr6 (238-384)||(29094045-29094194)
chr6 (244-379)||(3924147-3924280)
chr6 (236-362)||(8604001-8604129)
chr6 (236-328)||(13216848-13216941)
chr6 (232-338)||(6795437-6795545)
chr6 (101-185)||(7509734-7509818)
chr6 (232-362)||(18449272-18449404)
chr6 (236-362)||(19614654-19614782)
chr6 (264-376)||(29254513-29254624)
chr6 (315-379)||(32545152-32545218)
chr6 (264-362)||(20217939-20218036)
chr6 (264-362)||(22111964-22112061)
chr6 (264-379)||(24545067-24545182)
chr6 (232-362)||(25949818-25949950)
chr6 (275-377)||(32796010-32796112)
chr6 (315-362)||(18183842-18183889)
chr6 (316-382)||(19569610-19569677)
chr6 (315-362)||(35243818-35243865)
chr6 (236-360)||(25964416-25964542)
chr6 (236-360)||(25969063-25969189)
chr6 (240-313)||(20439456-20439529)
chr6 (264-328)||(28720816-28720881)
chr6 (264-342)||(1626668-1626748)
chr6 (264-362)||(22738386-22738486)
[»] chr1 (41 HSPs)
chr1 (227-379)||(26194721-26194874)
chr1 (227-370)||(30818648-30818792)
chr1 (236-384)||(25404519-25404668)
chr1 (236-382)||(20898092-20898240)
chr1 (236-416)||(16384363-16384541)
chr1 (232-379)||(20498053-20498202)
chr1 (240-358)||(23299393-23299512)
chr1 (20-183)||(49044587-49044758)
chr1 (232-379)||(20448904-20449053)
chr1 (232-379)||(20534670-20534819)
chr1 (240-403)||(21240572-21240740)
chr1 (265-380)||(15346301-15346416)
chr1 (264-370)||(16147899-16148006)
chr1 (244-376)||(12059223-12059357)
chr1 (240-379)||(20860138-20860279)
chr1 (240-382)||(13798875-13799018)
chr1 (236-362)||(46143002-46143130)
chr1 (236-386)||(41802773-41802925)
chr1 (231-391)||(25727448-25727610)
chr1 (231-391)||(25735856-25736018)
chr1 (236-382)||(28208384-28208534)
chr1 (101-176)||(10783570-10783645)
chr1 (235-356)||(20412752-20412875)
chr1 (315-362)||(52235448-52235495)
chr1 (240-382)||(49055973-49056117)
chr1 (236-353)||(52754816-52754935)
chr1 (238-362)||(19365137-19365263)
chr1 (232-379)||(22411607-22411755)
chr1 (133-186)||(37316136-37316189)
chr1 (264-362)||(18379685-18379785)
chr1 (315-416)||(44538783-44538888)
chr1 (275-391)||(1593714-1593832)
chr1 (131-186)||(3150663-3150718)
chr1 (315-362)||(41228869-41228916)
chr1 (131-186)||(47206743-47206798)
chr1 (264-357)||(48256821-48256916)
chr1 (264-362)||(8649416-8649517)
chr1 (264-403)||(17987106-17987244)
chr1 (275-357)||(12059960-12060044)
chr1 (264-362)||(19787722-19787822)
chr1 (265-379)||(24680607-24680721)
[»] scaffold0088 (1 HSPs)
scaffold0088 (218-384)||(39018-39184)
[»] scaffold0121 (1 HSPs)
scaffold0121 (17-186)||(33895-34071)
[»] scaffold0074 (2 HSPs)
scaffold0074 (227-379)||(22181-22334)
scaffold0074 (236-355)||(53703-53823)
[»] scaffold0001 (4 HSPs)
scaffold0001 (238-378)||(33378-33519)
scaffold0001 (238-378)||(38685-38826)
scaffold0001 (232-377)||(521248-521395)
scaffold0001 (228-379)||(82051-82203)
[»] scaffold0049 (2 HSPs)
scaffold0049 (222-408)||(31603-31792)
scaffold0049 (236-362)||(14073-14201)
[»] scaffold0123 (1 HSPs)
scaffold0123 (263-362)||(14610-14710)
[»] scaffold0021 (1 HSPs)
scaffold0021 (264-403)||(100736-100875)
[»] scaffold1092 (1 HSPs)
scaffold1092 (234-362)||(1164-1294)
[»] scaffold1058 (1 HSPs)
scaffold1058 (234-362)||(2541-2671)
[»] scaffold0098 (2 HSPs)
scaffold0098 (236-362)||(43769-43897)
scaffold0098 (240-376)||(4253-4391)
[»] scaffold0036 (1 HSPs)
scaffold0036 (237-362)||(110962-111089)
[»] scaffold0011 (1 HSPs)
scaffold0011 (264-376)||(175436-175550)
[»] scaffold0443 (1 HSPs)
scaffold0443 (228-385)||(3902-4059)
[»] scaffold0362 (1 HSPs)
scaffold0362 (264-382)||(8664-8780)
[»] scaffold0773 (1 HSPs)
scaffold0773 (236-362)||(1618-1746)
[»] scaffold0264 (1 HSPs)
scaffold0264 (264-403)||(21853-21992)
[»] scaffold0713 (1 HSPs)
scaffold0713 (264-362)||(6167-6264)
[»] scaffold0213 (1 HSPs)
scaffold0213 (236-325)||(22097-22187)
[»] scaffold0197 (1 HSPs)
scaffold0197 (236-386)||(8262-8414)
[»] scaffold0031 (2 HSPs)
scaffold0031 (264-362)||(78380-78480)
scaffold0031 (264-359)||(100939-101036)
[»] scaffold0042 (1 HSPs)
scaffold0042 (236-340)||(16907-17012)
[»] scaffold0916 (1 HSPs)
scaffold0916 (315-362)||(4116-4163)
[»] scaffold0251 (1 HSPs)
scaffold0251 (315-416)||(18320-18422)


Alignment Details
Target: chr3 (Bit Score: 173; Significance: 7e-93; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 204 - 416
Target Start/End: Complemental strand, 9774700 - 9774488
Alignment:
Q  204 aataagtgtgggttctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagat 303  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9774700 aataagtgtgggttctattgaaatacattcattgaggccgaaaggagatatgaaaagccaaagagaaacttgtctttagaaaatagatccaacgtaagat 9774601  T
Q  304 ttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaa 403  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||    
T  9774600 ttaggtttagggtttggtttgtaaaggatttgtcaccaagatgaaccaatactcccaagacgtttttattattattattttctataaaaaaaaaatccaa 9774501  T
Q  404 ctttttacctttg 416  Q
    |||||||||||||    
T  9774500 ctttttacctttg 9774488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 9762920 - 9762752
Alignment:
Q  18 gcaaaaaggatgaaaataaaaagtgaatcctatgttaccattggtgctttgaatttaaaattaaatgatttgtatttctttttgggaaatgctaacttgt 117  Q
    ||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9762920 gcaaaaaagaagaaaataaaaagtgaatcctatgttaccactggtgctttgaatttaaaattaaatgatttgtatttctttttgggaaatgctaacttgt 9762821  T
Q  118 gtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||||||| | | || ||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  9762820 gtcgataaggcacaaattaatgagtcaaaagtagaaatattttattgtaattaatgcatttgaatttaa 9762752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 9776129 - 9775963
Alignment:
Q  20 aaaaaggatgaaaataaaaagtgaatcctatgttaccattggtgctttgaatttaaaattaaatgatttgtatttctttttgggaaatgctaacttgtgt 119  Q
    ||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9776129 aaaaaagaagaaaataaaaagtgaatcctatgttcccactggtgctttgaatttaaaattaaatgatttgtatttctttttgggaaatgctaacttgtgt 9776030  T
Q  120 cgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||||| | | ||||||||| ||||||| || ||||| ||||||||| |||||| ||||||||||||    
T  9776029 cgataaggcacaagttaatgtgtcaaaaataaaaatattttattgtagttaatgcatttgaatttaa 9775963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 236 - 403
Target Start/End: Original strand, 17023740 - 17023908
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||   |||    
T  17023740 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaagttctaggtttagggtttggtttgtgaagagttt 17023839  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaa 403  Q
    ||||||| ||||||| |||||||||||| ||||||||||||||||||||||  ||||  ||||||||||    
T  17023840 gtcaccatgatgaactaataatcccaagacgtttttattattattattttcattcaattaaaaatccaa 17023908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 236 - 407
Target Start/End: Complemental strand, 11848458 - 11848287
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||||||| ||  ||||||| || ||||||||||||||||||||| || |||||    
T  11848458 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtctgacataaggttctaggtttagggtttggtttgttaaggattt 11848359  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaacttt 407  Q
    ||||||| || ||||||||||||||||| || |||||||||||||||||||| | ||||||||  ||||||||    
T  11848358 gtcaccatgacgaaccaataatcccaaggcgcttttattattattattttct-taaaacaaaatcccaacttt 11848287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 236 - 378
Target Start/End: Complemental strand, 11577339 - 11577196
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |||||    
T  11577339 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaggttctaggtttagggtttggtttgtgaaggattt 11577240  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattat 378  Q
    ||| ||| || |||||||||||||||||  | ||||||||||||    
T  11577239 gtcgccatgacgaaccaataatcccaaggtgcttttattattat 11577196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 240 - 378
Target Start/End: Complemental strand, 8685430 - 8685290
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | |||||||||||| ||||||||||||||||| ||||||||||  || |||||||||||||||||||||||| |||||||||    
T  8685430 accgaaaggagatgtgataggccaaagagaaacttgtctttagaaaataggtccaacataaagttctaggtttagggtttggtttgtgaaggatttgtca 8685331  T
Q  339 ccaagatgaaccaataatcccaagtcg-tttttattattat 378  Q
    ||| || ||||||||||||| ||| || |||||||||||||    
T  8685330 ccatgacgaaccaataatccaaaggcgctttttattattat 8685290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 204 - 288
Target Start/End: Complemental strand, 9762245 - 9762161
Alignment:
Q  204 aataagtgtgggttctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaata 288  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9762245 aataagtgtgggttctattgaaatacattcattgagaccgaaaggagatatgaaaagccaaagagaaacttgtctttagaaaata 9762161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 242 - 376
Target Start/End: Original strand, 8532398 - 8532535
Alignment:
Q  242 cgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt--aggtttagggtttggtttgtgaatgatttgtcac 339  Q
    ||||||||||| ||| | || ||||||||| ||||||||||||||||| |||||||||| | ||  ||||||||||||| ||||||||| | ||||||||    
T  8532398 cgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaaagttctaggtttagggtttcgtttgtgaagggtttgtcac 8532497  T
Q  340 caagatgaaccaataatcccaagtcg-tttttattatt 376  Q
    || ||| |||||||||||||||| || |||||||||||    
T  8532498 catgatcaaccaataatcccaaggcgctttttattatt 8532535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 17051263 - 17051379
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| ||| | ||||  |||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||     
T  17051263 aagagaaacttgtctttagaaagtaggtcctatataaagtttaggtttagggtttggtttgtgaaggttttgtcatcaagatgaaccaataatcccaaga 17051362  T
Q  364 c-gtttttattattatt 379  Q
    |  ||||||||||||||    
T  17051363 cactttttattattatt 17051379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 236 - 403
Target Start/End: Original strand, 40846977 - 40847146
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||| ||| || ||||||| ||| || ||||| ||||| || ||||||| | ||    
T  40846977 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaagtaggtctaacataaaattctaagtttaaggttttggcttgtgaagggtt 40847076  T
Q  334 tgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaa 403  Q
    |||||  | |||||||||||||||||||| || ||||||| |||||||||||| | ||  ||||||||||    
T  40847077 tgtcattatgatgaaccaataatcccaaggcgcttttatttttattattttcttttaattaaaaatccaa 40847146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 377
Target Start/End: Original strand, 22039366 - 22039481
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| ||||| ||||  |||||||||| ||||||||||||||| | ||||||| |||||||||||||||||| ||||     
T  22039366 aagagaaacttgtctttagaaagtaggtccaatataaagtttaggtttatggtttggtttgtgaaggttttgtcatcaagatgaaccaataatcacaaga 22039465  T
Q  364 cg--tttttattatta 377  Q
    ||  ||||||||||||    
T  22039466 cgcttttttattatta 22039481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 264 - 376
Target Start/End: Original strand, 13418920 - 13419033
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    ||||||||  ||| |||||||| ||| ||||| ||||  ||||||| |||||||||||||||||| | ||||||||||||||||| |||||||||||||     
T  13418920 aagagaaacctgtgtttagaaagtaggtccaatataaagtttaggtatagggtttggtttgtgaagggtttgtcaccaagatgaatcaataatcccaagg 13419019  T
Q  364 cg-tttttattatt 376  Q
    || |||||||||||    
T  13419020 cgctttttattatt 13419033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 379
Target Start/End: Original strand, 17775289 - 17775430
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    |||||||||||||  || | |||||||||||| |||| || ||||||||| ||||||||||  || |||||||| |||| |||||||||| |||||||||    
T  17775289 accgaaaggagatgagataggccaaagagaaacttgttttgagaaaataggtccaacataaagttctaggtttaaggttgggtttgtgaaagatttgtca 17775388  T
Q  339 ccaagatgaaccaataatcccaagtcg-tttttattattatt 379  Q
    ||| || |||||||||||| |||| || |||||||| |||||    
T  17775389 ccatgacgaaccaataatctcaaggcgctttttattgttatt 17775430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 379
Target Start/End: Original strand, 19076590 - 19076731
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    |||||||||||||  || | |||||||||||| |||| || ||||||||| ||||||||||  || |||||||| |||| |||||||||| |||||||||    
T  19076590 accgaaaggagatgagataggccaaagagaaacttgttttgagaaaataggtccaacataaagttctaggtttaaggttgggtttgtgaaagatttgtca 19076689  T
Q  339 ccaagatgaaccaataatcccaagtcg-tttttattattatt 379  Q
    ||| || |||||||||||| |||| || |||||||| |||||    
T  19076690 ccatgacgaaccaataatctcaaggcgctttttattgttatt 19076731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 362
Target Start/End: Complemental strand, 14347676 - 14347540
Alignment:
Q  228 acattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag-ggtttggtttgt 325  Q
    ||||||| ||||||||||||||||| ||| | || |||||||||  |||||||||||| ||| |  |||||||| || ||||||||  ||||||||||||    
T  14347676 acattcactgagaccgaaaggagatgtgataggctaaagagaaacctgtctttagaaattaggtgtaacataaggttctaggtttaatggtttggtttgt 14347577  T
Q  326 gaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    ||| |||||||| ||| |||| |||||||||||||||    
T  14347576 gaaggatttgtcgccatgatggaccaataatcccaag 14347540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 204 - 282
Target Start/End: Complemental strand, 27992109 - 27992031
Alignment:
Q  204 aataagtgtgggttctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttag 282  Q
    |||||| |||| | |||||||| |||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||    
T  27992109 aataagcgtggttgctattgaaatacattcattgagaccaaaaggagatatgaaaaaccaaagagaaacttgtctttag 27992031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 380
Target Start/End: Complemental strand, 11827008 - 11826855
Alignment:
Q  228 acattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtg 326  Q
    ||||||| ||||||||||||||||| ||| | || ||||||||| |||||||||||||  || ||  |||| ||| |||||||||| |||||| ||||||    
T  11827008 acattcactgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaagaaggtctgacataaagttttaggtttaaggtttgatttgtg 11826909  T
Q  327 aatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattatta 380  Q
    || | ||| |||||| ||   ||||||||||||||| |  ||||||||||||||    
T  11826908 aagggtttatcaccatgaccgaccaataatcccaagactcttttattattatta 11826855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 415
Target Start/End: Original strand, 25055516 - 25055706
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtgaat 329  Q
    ||||||||||||||||||||| ||| | || ||||||||| ||||||||||||| ||| || ||||| ||| | ||||||| | |||||  ||||||||     
T  25055516 tcattgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaattaggtctaacataaagttctaggtttaaaggttttttttgtgaag 25055615  T
Q  330 gatttgtcaccaagatgaaccaataatcccaagtc-gtttttattattattattttc----tatcaaacaaaaatccaactttttaccttt 415  Q
    | |||||||||| |||| ||||||||| ||||| |   |||||||||| ||||||||     || |||||||||| ||||||| |||||||    
T  25055616 ggtttgtcaccatgatggaccaataattccaaggctccttttattattgttattttcctttaattaaacaaaaatacaactttctaccttt 25055706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 3212959 - 3213086
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt--aggtttagggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||||| ||||||| ||| || ||||| || |||  || || | ||||||||||||||| ||||    
T  3212959 tgagaccgaaaggagatgtgataggctaaagagaaacttgtcgttagaaattaggtctaacatgaggttttaagtttaatggtttggtttgtgaaagatt 3213058  T
Q  334 tgtcaccaagatgaaccaataatcccaa 361  Q
    |||| ||| || ||||||||||||||||    
T  3213059 tgtcgccatgacgaaccaataatcccaa 3213086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 382
Target Start/End: Complemental strand, 42244105 - 42243986
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaat-aatcccaa 361  Q
    |||||||| |||| |||| ||| ||| ||||||||||  || |||||||||||||||||||||||| | ||||||||| | |||||||||| ||||||||    
T  42244105 aagagaaacttgtatttataaagtaggtccaacataaagttctaggtttagggtttggtttgtgaagggtttgtcacc-atatgaaccaataaatcccaa 42244007  T
Q  362 gtcgtttttattattattatt 382  Q
      || ||||||||||||||||    
T  42244006 tgcgcttttattattattatt 42243986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 20354700 - 20354755
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  20354700 aagttaatcagtcaaaagtagaaatattttattgtaattaatgcatttgaatttaa 20354755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 382
Target Start/End: Original strand, 3280339 - 3280487
Alignment:
Q  238 agaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag-ggtttggtttgtgaatgatttg 335  Q
    ||||||||||||||| ||| | || ||||||||| ||||||||||| | ||  || ||||| || || ||||||||  ||||||||||||||| ||||||    
T  3280339 agaccgaaaggagatgtgataggctaaagagaaacttgtctttagagattaagtctaacatcaggttctaggtttaatggtttggtttgtgaaagatttg 3280438  T
Q  336 tcaccaagatgaaccaataatcccaag--tcgtttttattattattatt 382  Q
    || ||| || | |||||||||||||||  ||  ||||||||||||||||    
T  3280439 tcgccatgacggaccaataatcccaaggctctcttttattattattatt 3280487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 11399382 - 11399510
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataaga-tttaggtttagg-gtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||| | ||||||| ||| || ||||| ||  ||||||||||   |||||||||||||| ||||    
T  11399382 tgagaccgaaaggagatgtgataggctaaagagaaacttgcccttagaaattaggtctaacatgaggctttaggtttaattgtttggtttgtgaaggatt 11399481  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||||  | ||||||||||||||||||||    
T  11399482 tgtcattatgatgaaccaataatcccaag 11399510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 387
Target Start/End: Original strand, 17210114 - 17210234
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| ||||| ||||  ||||||||||||||||| |||||||| | ||| |||  ||||||||||||| ||| ||||     
T  17210114 aagagaaacttgtctttagaaagtaggtccaatataaagtttaggtttagggtttg-tttgtgaagggtttatcattaagatgaaccaatgatctcaagg 17210212  T
Q  364 cgtttttattattattattttcta 387  Q
    |  ||||  |||||||||||||||    
T  17210213 ctctttt--tattattattttcta 17210234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 385
Target Start/End: Original strand, 27407784 - 27407864
Alignment:
Q  305 taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttc 385  Q
    |||||||| ||||||||||||||| | |||||||||| |||  |||||||||| |||| |  |||||||||||||||||||    
T  27407784 taggtttaaggtttggtttgtgaagggtttgtcaccatgatcgaccaataatctcaaggctcttttattattattattttc 27407864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 309 - 415
Target Start/End: Complemental strand, 27992035 - 27991928
Alignment:
Q  309 tttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattatt-attttctatcaaacaaaaat-ccaactt 406  Q
    |||||||||||||||||||| ||||||| | ||| |||||||||| |||||||| || |||||| |||||| |||||| ||| ||||||| | |||||||    
T  27992035 tttagggtttggtttgtgaaagatttgttatcaatatgaaccaatgatcccaaggcgcttttatcattattaattttcaatc-aacaaaattcccaactt 27991937  T
Q  407 tttaccttt 415  Q
    || ||||||    
T  27991936 ttaaccttt 27991928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 37311655 - 37311710
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||||| |||||||| ||||||||| |||||||||||| ||||||||||||    
T  37311655 aagttaatgagacaaaagtataaataatttgttgtaattaatgcatttgaatttaa 37311710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 54362012 - 54362097
Alignment:
Q  101 gggaaatgctaacttgtgtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||||||| ||||||||| |  ||| | | |||||||||||||||||||||||||| ||  ||||||| |||| ||||||||||||    
T  54362012 gggaaatgttaacttgtgcccttaaggcacaagttaatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatttaa 54362097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 36079566 - 36079694
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataa-gatttaggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || || |||||| ||||||||||||| ||| || ||||||| | ||||||||| | |||||||||| ||||  |||    
T  36079566 tgagaccgaaaggagatgtgataggctaatgagaaacttgtctttagaaattaggtctaacataaggttttaggtttaatggtttggtttctgaagaatt 36079665  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||| ||| ||   |||||||||||||||    
T  36079666 tgtcgccatgacagaccaataatcccaag 36079694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 23072025 - 23071970
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||||| |||||||  ||||| |||||||||||||||| ||||||||||||    
T  23072025 aagttaatgagccaaaagtgaaaatattttattgtaattaatgcatttgaatttaa 23071970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 403
Target Start/End: Original strand, 6237362 - 6237529
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttag--gtttagggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| || |||||||||| |||||| || |||| | ||||  ||||||||||| ||| ||||| ||||    
T  6237362 tgagaccgaaaggagatgtgataggctaaagagaaacttatctttagaaagtagatcaaatataa-agttagaagtttagggttt-gttggtgaaggatt 6237459  T
Q  334 tgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaa 403  Q
    |||    | |||||||||||||||||||  |  ||||||| ||||| |||||| | ||  ||||||||||    
T  6237460 tgttgttatgatgaaccaataatcccaatgctcttttatttttattcttttcttttaattaaaaatccaa 6237529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 362
Target Start/End: Complemental strand, 19566581 - 19566455
Alignment:
Q  238 agaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtgaatgatttg 335  Q
    ||||||||||||||| ||| | || ||||||||| ||||| ||||||| ||| || ||||| | | ||||||||| | |||||||||| |||| |||||     
T  19566581 agaccgaaaggagatgtgataggctaaagagaaacttgtccttagaaattaggtctaacatgacgttttaggtttaatggtttggtttatgaaagatttt 19566482  T
Q  336 tcaccaagatgaaccaataatcccaag 362  Q
    || ||| || | |||||||||||||||    
T  19566481 tctccatgacggaccaataatcccaag 19566455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 362
Target Start/End: Original strand, 47975343 - 47975432
Alignment:
Q  275 gtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    ||||||||||| ||| || |||||||| || |||||||| ||||| |||||||||| ||||| |||  | ||||||||||||||||||||    
T  47975343 gtctttagaaattaggtctaacataaggttctaggtttaaggttttggtttgtgaaggatttatcattatgatgaaccaataatcccaag 47975432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 3455929 - 3455874
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||||||||||||||| ||||||||| ||| |||||||||||| | ||| ||||||    
T  3455929 aagttaatgagtcaaatgtagaaatattttcttgtaattaatgcacttgcatttaa 3455874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 337
Target Start/End: Complemental strand, 37977895 - 37977792
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttaggg-tttggtttgtgaatgatt 333  Q
    ||||||||| ||||||| ||| | ||  |||||||| | ||||||||||| ||| || |||||||| ||| |||||||  | ||||||||||||||||||    
T  37977895 tgagaccgataggagatgtgataggcttaagagaaactcgtctttagaaactaggtctaacataaggttttaggtttaatgatttggtttgtgaatgatt 37977796  T
Q  334 tgtc 337  Q
    ||||    
T  37977795 tgtc 37977792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 53683949 - 53684004
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||||| |||||||  ||||||||| || ||||||||| ||||||||||||    
T  53683949 aagttaatgagccaaaagtgaaaataatttgttttaattaatgtatttgaatttaa 53684004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 340
Target Start/End: Original strand, 13605541 - 13605647
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||| | ||| | || ||||||| | ||||||||| ||| ||| || |||||||| || ||||||| | || |||||||||||| ||||    
T  13605541 tgagaccgaaaggaggtgtgataggctaaagagacacttgtctttataaattaggtctaacataaggttctaggtttaaaggattggtttgtgaaggatt 13605640  T
Q  334 tgtcacc 340  Q
    |||||||    
T  13605641 tgtcacc 13605647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 173
Target Start/End: Original strand, 41666926 - 41666968
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatg 173  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||    
T  41666926 aagttaatgagtcaaaagtaaaaatattttattgtaatcaatg 41666968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 218 - 416
Target Start/End: Original strand, 17169268 - 17169466
Alignment:
Q  218 ctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtt 317  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||    
T  17169268 ctattgaaatacattcattgagactgaaaggagatatgaaaagccaaagagatacttgtctttagaaaatagatctaacataagatttaggtttagtgtt 17169367  T
Q  318 tggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaactttttacctttg 416  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  17169368 tggtttgtgaaggatttgtcaccaagatgaaccaataatcccaaggcgtttttaatattattattttcaatcaaacaaaaatccaactttttacctttg 17169466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 218 - 416
Target Start/End: Original strand, 17174828 - 17175026
Alignment:
Q  218 ctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtt 317  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||| |||    
T  17174828 ctattgaaatacattcattgagactgaaaggagatatgaaaagccaaagagatacttgtctttagaaaatagatctaacataagatttaggtttagtgtt 17174927  T
Q  318 tggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaactttttacctttg 416  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  17174928 tggtttgtgaaggatttgtcaccaagatgaaccaataatcccaaggcgtttttaatattattattttcaatcaaacaaaattccaactttttacctttg 17175026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 236 - 378
Target Start/End: Original strand, 25190685 - 25190828
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttagggtttggtttgtgaatgattt 334  Q
    |||||| |||||||||| ||| | || ||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| |||||    
T  25190685 tgagacagaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaggttttaggtttagggtttggtttgtgaaggattt 25190784  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattat 378  Q
    |||||||||||||||||||||||||||| |  ||||||||||||    
T  25190785 gtcaccaagatgaaccaataatcccaaggcacttttattattat 25190828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 236 - 382
Target Start/End: Original strand, 5675970 - 5676118
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataaga-tttaggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| |||| ||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||    
T  5675970 tgagaccgaaaggagatgtgataagctaaagagaaacttgtctttagaaaataggtccaacataagattttaggtttagggtttgatttgtgaaggattt 5676069  T
Q  335 gtcaccaagatgaaccaataatcccaagtcg-tttttattattattatt 382  Q
    || |||| || ||||||||||| ||||| || || ||||||||||||||    
T  5676070 gttaccatgacgaaccaataattccaagacgcttattattattattatt 5676118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 232 - 377
Target Start/End: Complemental strand, 12345549 - 12345402
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatg 330  Q
    ||||||||||||||||||||| ||| | || ||||||||| |||||||||||||| || || |||||||  || |||||||| ||||||||||||||| |    
T  12345549 tcattgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaaaaaggtctaacataaagttctaggtttaaggtttggtttgtgaagg 12345450  T
Q  331 atttgtcaccaagatgaaccaataatcccaagtcg-tttttattatta 377  Q
    ||||||||||| |||||||||||||||||||  || ||||||||||||    
T  12345449 atttgtcaccatgatgaaccaataatcccaatgcgctttttattatta 12345402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 240 - 362
Target Start/End: Complemental strand, 8561902 - 8561779
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | || ||||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||||| ||||||| |||||||||    
T  8561902 accgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaaattctaggtttagggtttggattgtgaaggatttgtca 8561803  T
Q  339 ccaagatgaaccaataatcccaag 362  Q
    ||| || |||||||||||| ||||    
T  8561802 ccatgacgaaccaataatctcaag 8561779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 236 - 376
Target Start/End: Complemental strand, 11922032 - 11921891
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    |||||||||||||| || ||| | || ||||||||| ||||||||||||| ||| ||||||||||  || |||||||||||||||||||||||| | |||    
T  11922032 tgagaccgaaaggatatgtgataggctaaagagaaacttgtctttagaaa-taggtccaacataaagttataggtttagggtttggtttgtgaagggttt 11921934  T
Q  335 gtcaccaagatgaaccaataatcccaagtcg-tttttattatt 376  Q
    ||||||| || ||||||||||||||||| || |||||||||||    
T  11921933 gtcaccatgacgaaccaataatcccaaggcgctttttattatt 11921891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 379
Target Start/End: Complemental strand, 33330594 - 33330453
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | || ||||||||| ||||||||||||||||| |||||||| ||| | |||||||| ||||||||||||||| || ||||||    
T  33330594 accgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaagttctaggtttacggtttggtttgtgaaggaattgtca 33330495  T
Q  339 ccaagatgaaccaataatcccaagtcg-tttttattattatt 379  Q
      | || |||||||| |||||||| || |||||||| |||||    
T  33330494 aaatgacgaaccaattatcccaagacgctttttattgttatt 33330453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 361
Target Start/End: Original strand, 9857702 - 9857837
Alignment:
Q  228 acattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgt 325  Q
    ||||||| ||||||||||||||||| ||| | || ||||||||| || |||||||||| ||| || |||||||| || ||||||| ||| |||||||||     
T  9857702 acattcactgagaccgaaaggagatgtgatatgctaaagagaaacttatctttagaaattaggtctaacataaggttctaggtttaaggttttggtttgc 9857801  T
Q  326 gaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
     || |||||||||  | |||||||||||||||||||    
T  9857802 aaaggatttgtcattatgatgaaccaataatcccaa 9857837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 382
Target Start/End: Original strand, 10731636 - 10731783
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||| ||| |||||||||||||  || || |||||||  || |||||||| |||||| |||| ||| | |||    
T  10731636 tgagaccgaaaggagatgtgataggctaaagataaacttgtctttagaaagaaggtctaacataaagttctaggtttaaggtttgatttgagaagggttt 10731735  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattattatt 382  Q
    ||||||| || | ||||||||||||||| |  ||||||||||||||||    
T  10731736 gtcaccatgacggaccaataatcccaagactcttttattattattatt 10731783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 382
Target Start/End: Original strand, 10945405 - 10945552
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||| ||| |||||||||||||  || || |||||||  || |||||||| |||||| |||| ||| | |||    
T  10945405 tgagaccgaaaggagatgtgataggctaaagataaacttgtctttagaaagaaggtctaacataaagttctaggtttaaggtttgatttgagaagggttt 10945504  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattattatt 382  Q
    ||||||| || | ||||||||||||||| |  ||||||||||||||||    
T  10945505 gtcaccatgacggaccaataatcccaagactcttttattattattatt 10945552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 403
Target Start/End: Complemental strand, 20058754 - 20058589
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttg 335  Q
    ||||||||||||||||| ||| | || ||||||||| ||||  ||||||| || |||||| |||| |||  |||||||||||| ||||||||| || |||    
T  20058754 tgagaccgaaaggagatgtgataggctaaagagaaacttgttgttagaaagtaaatccaatataaaattctggtttagggttt-gtttgtgaaggacttg 20058656  T
Q  336 tcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaa 403  Q
    | |   ||||||||||||||| ||||| || ||||||| |||||||||||| | ||  ||||||||||    
T  20058655 ttatttagatgaaccaataat-ccaaggcgcttttatttttattattttcttttaattaaaaatccaa 20058589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 263 - 386
Target Start/End: Original strand, 31594408 - 31594530
Alignment:
Q  263 aaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    ||||||||| ||||||||||||| || |||||| |||| |||  ||||||||||||| |||||||| |  |||| |   ||||||||||||||||||||     
T  31594408 aaagagaaacttgtctttagaaagtaaatccaatataaaattctggtttagggtttg-tttgtgaagggcttgttatttagatgaaccaataatcccaaa 31594506  T
Q  363 tcgtttttattattattattttct 386  Q
     |||||||||| ||||||||||||    
T  31594507 gcgtttttatttttattattttct 31594530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 361
Target Start/End: Original strand, 9192810 - 9192868
Alignment:
Q  303 tttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||    
T  9192810 tttaggtttagggtttggtttgtgaagggtttgtcaccaagatgaatcaataatcccaa 9192868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 378
Target Start/End: Complemental strand, 16953512 - 16953367
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| |||| |||||||| ||| || ||||| ||| | ||||||| ||| ||||||||||||| | ||    
T  16953512 tgagaccgaaaggagatgtgataggctaaagagaaacttgtttttagaaagtaggtctaacataaagttctaggtttaaggttttggtttgtgaagggtt 16953413  T
Q  334 tgtcaccaagatgaaccaataatcccaagtc-gtttttattattat 378  Q
    |||||  | |||||||||||||||||||| |  |||||||||||||    
T  16953412 tgtcattatgatgaaccaataatcccaagactctttttattattat 16953367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 387
Target Start/End: Original strand, 38652687 - 38652810
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||||||||||| | | |||||||| ||| | |||||||| |||||||||| |||| | ||||||| ||||||||||||||||||| |||    
T  38652687 aagagaaacttgtctttagaaagtgggtccaacattaagttctaggtttaaggtttggtttatgaagggtttgtcatcaagatgaaccaataatcctaag 38652786  T
Q  363 tcgtttttattattattattttcta 387  Q
      |  ||| ||||||||||||||||    
T  38652787 aagccttt-ttattattattttcta 38652810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 2554248 - 2554162
Alignment:
Q  100 tgggaaatgctaacttgtgtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||||||||||||| |  ||| | | |||||||||| |||||| |||||||| || ||||||||||||| ||||||||||||    
T  2554248 tgggaaatgctaacttgtgcccttaaggcacaagttaatgaatcaaaaatagaaatatttaattgtaattaatgcatttgaatttaa 2554162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 384
Target Start/End: Complemental strand, 43701131 - 43701010
Alignment:
Q  262 caaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||||| ||||||||||||| || |||||| |||| |||  |||||||||||| ||||||||| || |||| |   |||||||||||||||| |||    
T  43701131 caaagagaaacttgtctttagaaagtaaatccaatataaaattatggtttagggttt-gtttgtgaaggacttgttatttagatgaaccaataatcacaa 43701033  T
Q  362 gtcgtttttattattattatttt 384  Q
      || ||||||| ||||||||||    
T  43701032 tgcgcttttatttttattatttt 43701010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 379
Target Start/End: Complemental strand, 11902210 - 11902063
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||  ||| | || ||||||||| ||||||||| ||| ||| || ||||| ||| | ||||||| ||| ||||||||||||| | ||    
T  11902210 tgagaccgaaaggagaagtgataggctaaagagaaacttgtctttaaaaattaggtctaacataaagttctaggtttaaggttttggtttgtgaagggtt 11902111  T
Q  334 tgtcaccaagatgaaccaataatcccaagtcg--tttttattattatt 379  Q
    |||||  | || ||||||||||||||||| ||  ||||||||||||||    
T  11902110 tgtcattatgacgaaccaataatcccaaggcgcctttttattattatt 11902063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 362
Target Start/End: Complemental strand, 39043077 - 39042949
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatt 333  Q
    |||||||||||||| || ||| | || ||||||||| ||||| ||||||| ||| || ||||| || ||| |||||||  |||||||||| |||| ||||    
T  39043077 tgagaccgaaaggatatctgataggctaaagagaaaattgtccttagaaattaggtctaacatgaggttttaggtttaatggtttggtttatgaaagatt 39042978  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||| ||| || | |||||||||||||||    
T  39042977 tgtcgccatgacggaccaataatcccaag 39042949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 50685604 - 50685659
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||||| ||||||| |||||||||| ||||||| |||| ||||||||||||    
T  50685604 aagttaatgagccaaaagtggaaataatttgttgtaataaatgtatttgaatttaa 50685659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 11325495 - 11325592
Alignment:
Q  285 aatagatccaacata-agatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattatt 382  Q
    ||||| ||||||||| || | |||||||||| |||||||| |||| |||||||||||| || ||||||||||||||||| |   ||| |||||||||||    
T  11325495 aataggtccaacatacagttctaggtttagg-tttggtttatgaaggatttgtcaccatgacgaaccaataatcccaagacaccttttttattattatt 11325592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 13529361 - 13529415
Alignment:
Q  132 agttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||||||||||||| ||||  ||| |||||||||||| ||||||||||||    
T  13529361 agttaatgagtcaaaagtataaattttttgttgtaattaatgcatttgaatttaa 13529415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 401
Target Start/End: Complemental strand, 13883037 - 13882952
Alignment:
Q  314 ggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatcc 401  Q
    ||||||| ||||||| |||||||||  | |||||||||| ||||||||| |  ||||  ||||||||||||| ||||| |||||||||    
T  13883037 ggtttggattgtgaaagatttgtcattatgatgaaccaacaatcccaaggcactttt--tattattattttcaatcaatcaaaaatcc 13882952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 13902024 - 13902080
Alignment:
Q  130 aaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||| |||||||||||||||||||||| ||  ||||||| |||| ||||||||||||    
T  13902024 aaaggtaatgagtcaaaagtagaaatatttggttgtaatcaatgcatttgaatttaa 13902080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 14134939 - 14134863
Alignment:
Q  110 taacttgtgtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||||||||||  ||| ||| |||||||||||||||||||| | ||| ||  |||||||||||| ||||||| ||||    
T  14134939 taacttgtgtccttaaggtataagttaatgagtcaaaagtatacatatttctttgtaattaatgcatttgaacttaa 14134863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 3355850 - 3355897
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    ||||||||||||||||| ||||||   |||||||||||||||||||||    
T  3355850 gtttggtttgtgaatgacttgtcaattagatgaaccaataatcccaag 3355897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 29367518 - 29367601
Alignment:
Q  219 tattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataaga 302  Q
    ||||||| ||||||||| |||||||||||||||||| |||  ||  |||||||  | ||||||||||||| ||| |||| ||||    
T  29367518 tattgaaatacattcatggagaccgaaaggagatatcaaataccttagagaaacctatctttagaaaataaatctaacaaaaga 29367601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 33112022 - 33111967
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||| || ||||||||  |||||||||||||||||||||  ||||||||||||    
T  33112022 aagttaacgaatcaaaagtgaaaataatttattgtaattaatctatttgaatttaa 33111967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Original strand, 13622876 - 13622922
Alignment:
Q  316 tttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    ||||||||||||| |||||||||  | ||||||||||||||||||||    
T  13622876 tttggtttgtgaaggatttgtcattatgatgaaccaataatcccaag 13622922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 24493535 - 24493591
Alignment:
Q  314 ggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgttttt 370  Q
    ||||||| |||||| | ||||||||  | |||||||||||||||||||| |||||||    
T  24493535 ggtttggattgtgagtaatttgtcattacgatgaaccaataatcccaagacgttttt 24493591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 48)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 218 - 416
Target Start/End: Complemental strand, 679110 - 678906
Alignment:
Q  218 ctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtt 317  Q
    |||||||| ||||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||    
T  679110 ctattgaaatacattcattgagaccgaaagaagatatgaaaagtcaaagagaaacttgtctttagaaaatagatctaacgtaagatttaggtttagggtt 679011  T
Q  318 tggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattat------tattttctatcaaacaaaaatccaactttttac 411  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| | |||| ||||||||||      ||||||| |||||||||||||||||||||||||    
T  679010 tggtttgtgaaagatttgtcaccaagatgaaccaataattccagggcgttattattattattattattattttcaatcaaacaaaaatccaactttttac 678911  T
Q  412 ctttg 416  Q
    |||||    
T  678910 ctttg 678906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 218 - 415
Target Start/End: Original strand, 15523509 - 15523710
Alignment:
Q  218 ctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggt 316  Q
    ||||| || |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  15523509 ctattaaaatacatttattgagaccgaaagaagatatgaaaagccaaagagaaacttgtctttagaaaataggtccaacataagattctaggtttagggt 15523608  T
Q  317 ttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttct--atcaaacaaaaat-ccaactttttacct 413  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||| |  ||||||||||||| ||||||||||| ||    
T  15523609 ttggtttgcgaatgatttatcaccaagatgaaccaataatcccaaggcatttttattattgttattttttaaatcaaacaaaaatcccaactttttaact 15523708  T
Q  414 tt 415  Q
    ||    
T  15523709 tt 15523710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 231 - 416
Target Start/End: Original strand, 12348467 - 12348653
Alignment:
Q  231 ttcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatg 330  Q
    |||||||||||| | ||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |    
T  12348467 ttcattgagacctagaggagatgtgaaaagccaaagagaaacttgtctttagaaaatagatccaacgtaagatttaggtttagtgtttggtttgtgaagg 12348566  T
Q  331 atttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctat-caaacaaaaatccaactttttacctttg 416  Q
    ||||||||||||||||||||||||||||||||  |||||||||||| ||||||| | |  |||||||||| |||| ||||| |||||    
T  12348567 atttgtcaccaagatgaaccaataatcccaaggagtttttattattgttattttatttgaaaacaaaaatacaacattttaactttg 12348653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 219 - 382
Target Start/End: Original strand, 38877887 - 38878057
Alignment:
Q  219 tattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaat-----ttgtctttagaaaatagatccaacataagatt-taggttta 312  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||     |||| ||||| |||||| | |||||||||||| ||||||||    
T  38877887 tattgaaatacattcattgagaccgaaaagagatatgaaaagccaaagagaaattaaacttgtttttaggaaataggttcaacataagattctaggttta 38877986  T
Q  313 gggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcg-tttttattattattatt 382  Q
    || || |||||||||| |||||||||| || |||||| |||||||||||  || |||||||||||||||||    
T  38877987 ggattaggtttgtgaaggatttgtcactaaaatgaactaataatcccaatacgctttttattattattatt 38878057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 236 - 362
Target Start/End: Complemental strand, 4460383 - 4460256
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||||||| | || ||||||||| ||||||||||||||||| |||||||| ||| | |||||||| ||||||||||||||| |||||    
T  4460383 tgagaccgaaaggagatatgataggctaaagagaaacttgtctttagaaaataggtccaacataaagttctaggtttaaggtttggtttgtgaaggattt 4460284  T
Q  335 gtcaccaagatgaaccaataatcccaag 362  Q
    ||||||| || |||||||||||||||||    
T  4460283 gtcaccatgacgaaccaataatcccaag 4460256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 232 - 384
Target Start/End: Complemental strand, 11483448 - 11483295
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatg 330  Q
    ||||||||||||||||||||| ||| | || ||||||||| ||||||||||||||||| ||||| ||||  || |||||||||||||||||||||| | |    
T  11483448 tcattgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaaaataaagttctaggtttagggtttggtttgtgtagg 11483349  T
Q  331 atttgtcaccaagatgaaccaataatcccaagtcgtttttattattattatttt 384  Q
     |||||||||| |||| ||||||||||| ||| || ||||||||||||| ||||    
T  11483348 gtttgtcaccatgatggaccaataatcctaaggcgcttttattattattgtttt 11483295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 237 - 377
Target Start/End: Complemental strand, 30063549 - 30063408
Alignment:
Q  237 gagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttg 335  Q
    |||| ||||||||||| ||| | || ||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||||||| |||| ||||||    
T  30063549 gagatcgaaaggagatgtgataggctaaagagaaacttgtcttttgaaaataggtccaacataaggttctaggtttagggtttggtttctgaaggatttg 30063450  T
Q  336 tcaccaagatgaaccaataatcccaagtcgtttttattatta 377  Q
    |||||| || ||||||||||||||||| || |||||||||||    
T  30063449 tcaccatgacgaaccaataatcccaaggcgcttttattatta 30063408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 379
Target Start/End: Complemental strand, 4465373 - 4465229
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttagggtttggtttgtgaatgattt 334  Q
    |||||| |||||||||| ||| | || ||||| ||||||||||||||||||||| ||||| ||||| ||| ||||||||||||||||||||||| |||||    
T  4465373 tgagactgaaaggagatgtgataggctaaagaaaaatttgtctttagaaaataggtccaaaataaggttttaggtttagggtttggtttgtgaaggattt 4465274  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattatt 379  Q
    ||||||| || |||| ||||||||| || || |||||||||||||    
T  4465273 gtcaccatgacgaactaataatccctagacgcttttattattatt 4465229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 17912085 - 17912212
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    |||||||||||||| || ||| | || ||||| ||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |||||    
T  17912085 tgagaccgaaaggatatgtgataggctaaagacaaacttgtctttagaaaataggtccaacataaggttctaggtttagggtttggtttgtgaaggattt 17912184  T
Q  335 gtcaccaagatgaaccaataatcccaag 362  Q
    ||||||| || |||||||||||||||||    
T  17912185 gtcaccatgacgaaccaataatcccaag 17912212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 243 - 379
Target Start/End: Original strand, 4541675 - 4541813
Alignment:
Q  243 gaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcacca 341  Q
    |||||||||| | | | |||| ||||||| ||||||||| ||||||| ||||||||||  || |||||||||||||||||||||||| ||||||||||||    
T  4541675 gaaaggagatgtaataggccatagagaaacttgtctttaaaaaataggtccaacataaagttctaggtttagggtttggtttgtgaaggatttgtcacca 4541774  T
Q  342 agatgaaccaataatcccaagtcg-tttttattattatt 379  Q
     || ||||||||||||||||| || ||||||||||||||    
T  4541775 tgacgaaccaataatcccaaggcgctttttattattatt 4541813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 240 - 378
Target Start/End: Complemental strand, 4982737 - 4982598
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | |  ||||||||| ||||||||||||||||| ||||||||||  || |||||||||||||||||||||||| | |||||||    
T  4982737 accgaaaggagatgtgataggttaaagagaaacttgtctttagaaaataggtccaacataaagttctaggtttagggtttggtttgtgaagggtttgtca 4982638  T
Q  339 ccaagatgaaccaataatcccaagtcgtttttattattat 378  Q
    ||| ||  ||||||||||| |||| || ||||||||||||    
T  4982637 ccatgacaaaccaataatctcaaggcgcttttattattat 4982598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 266 - 403
Target Start/End: Original strand, 8837098 - 8837234
Alignment:
Q  266 gagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcg 365  Q
    |||||| |||||||| |||| ||| ||||| ||||  ||||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||||| ||    
T  8837098 gagaaacttgtctttggaaagtaggtccaatataaagtttaggtttagggtttg-tttgtgaagggtttgtcatcaagatgaaccaataatcccaagacg 8837196  T
Q  366 tttttattattattattttctatcaaacaaaaatccaa 403  Q
     ||||||| |||||||||||| | ||  ||||||||||    
T  8837197 gttttatttttattattttcttttaattaaaaatccaa 8837234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 1614415 - 1614542
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||| ||| || ||||| ||| | ||||||| ||| ||||||||||||| ||||    
T  1614415 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaagtaggtctaacataaagttctaggtttaaggttttggtttgtgaaggatt 1614514  T
Q  334 tgtcaccaagatgaaccaataatcccaa 361  Q
    |||||  | |||||||||||||||||||    
T  1614515 tgtcattatgatgaaccaataatcccaa 1614542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 39271658 - 39271786
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||| ||| || |||||||| || ||||||| | ||||||||||||||| | ||    
T  39271658 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaattaggtctaacataaggttctaggtttaatggtttggtttgtgaagggtt 39271757  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||| ||| || | |||||||||||||||    
T  39271758 tgtcgccatgacggaccaataatcccaag 39271786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 362
Target Start/End: Complemental strand, 17206137 - 17206016
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | || ||||||||| |||| |||||||||||| |||||||| ||| | |||||||| |||||||||| |||| |||||||||    
T  17206137 accgaaaggagatgtgataggctaaagagaaacttgtatttagaaaataggtccaacataaagttctaggttta-ggtttggtttatgaaggatttgtca 17206039  T
Q  339 ccaagatgaaccaataatcccaag 362  Q
    ||| ||  ||||||||||||||||    
T  17206038 ccatga-caaccaataatcccaag 17206016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 48713949 - 48714076
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||||||| || | |||||||| ||| |  |||||||| || |||||||| | |||| |||||||| |||||    
T  48713949 tgagaccgaaaggagatgtgataggctaaagagaaacttatttttagaaattaggtataacataaggttctaggtttaagatttgttttgtgaaggattt 48714048  T
Q  335 gtcaccaagatgaaccaataatcccaag 362  Q
    |||| | |||||||||||||||||||||    
T  48714049 gtcatctagatgaaccaataatcccaag 48714076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 236 - 384
Target Start/End: Complemental strand, 3376102 - 3375950
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||| ||| ||||||||||||| ||| || |||||||| || ||||||| | |||| |||||||||| ||||    
T  3376102 tgagaccgaaaggagatgtgataggctaaagataaacttgtctttagaaattaggtctaacataaggttctaggtttaaaggttaggtttgtgaaggatt 3376003  T
Q  334 tgtcaccaagatgaaccaataatcccaag--tcgtttttattattattatttt 384  Q
    | |||||| || |||||||||||| ||||   | || ||||||||||||||||    
T  3376002 tttcaccatgacgaaccaataatctcaaggcaccttattattattattatttt 3375950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 267 - 382
Target Start/End: Complemental strand, 8780003 - 8779890
Alignment:
Q  267 agaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgt 366  Q
    ||||| ||||||||||||| ||| || |||||||  |||||||||||||||| ||||||||| | ||||| |  | |||||||||||||||||||| ||     
T  8780003 agaaacttgtctttagaaagtaggtcaaacataaagtttaggtttagggttt-gtttgtgaagggtttgttattatgatgaaccaataatcccaaggcgc 8779905  T
Q  367 ttttattattattatt 382  Q
    ||||||| ||||||||    
T  8779904 ttttatt-ttattatt 8779890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 42121298 - 42121386
Alignment:
Q  96 tttttgggaaatgctaacttgtgtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||| |||||||||||||||||| |  ||  ||| |||||||||||| |||| || ||||||||| |||||||||||| ||||||||||||    
T  42121298 ttttagggaaatgctaacttgtgccctta--gtacaagttaatgagttaaaaatataaataatttgttgtaattaatgcatttgaatttaa 42121386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 341
Target Start/End: Complemental strand, 16896851 - 16896745
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    |||||| |||||||||  ||| | || ||||||||| |||||||||||||  || || |||||||  || |||||||| |||||| ||||||||||||||    
T  16896851 tgagacagaaaggagacgtgataggctaaagagaaacttgtctttagaaagaaggtctaacataaagttctaggtttaaggtttgatttgtgaatgattt 16896752  T
Q  335 gtcacca 341  Q
    |||||||    
T  16896751 gtcacca 16896745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 358
Target Start/End: Complemental strand, 4256195 - 4256078
Alignment:
Q  242 cgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcacc 340  Q
    ||||||||||| ||| | ||  |||||||| ||||||||||||| ||| || | |||||  || ||||||||||||||||||| |||| | ||||||| |    
T  4256195 cgaaaggagatgtgataggcttaagagaaacttgtctttagaaagtaggtcaatcataaagttctaggtttagggtttggtttttgaagggtttgtcatc 4256096  T
Q  341 aagatgaaccaataatcc 358  Q
    ||||| ||| ||||||||    
T  4256095 aagattaactaataatcc 4256078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 267 - 382
Target Start/End: Complemental strand, 8786842 - 8786729
Alignment:
Q  267 agaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgt 366  Q
    ||||| ||||||||||||| ||| || || ||||  |||||||||||||||| ||||||||| | ||||| |  | ||||||||||||||| |||| ||     
T  8786842 agaaacttgtctttagaaagtaggtcaaatataaagtttaggtttagggttt-gtttgtgaagggtttgttattatgatgaaccaataatctcaaggcgc 8786744  T
Q  367 ttttattattattatt 382  Q
    ||||||| ||||||||    
T  8786743 ttttatt-ttattatt 8786729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Complemental strand, 29724423 - 29724368
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||| ||| ||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  29724423 aagtaaataagtcaaaagtagaaataatttgttgtaataaatgcatttgaatttaa 29724368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 9658337 - 9658391
Alignment:
Q  132 agttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||||||||||||| ||||  ||| |||||||||||| ||||||||||||    
T  9658337 agttaatgagtcaaaagtataaattttttgttgtaattaatgcatttgaatttaa 9658391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 379
Target Start/End: Original strand, 16487824 - 16487970
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || |||| |||| ||||| ||||||| ||| || ||||  || ||| |||||||  ||||||||||||||| ||||    
T  16487824 tgagaccgaaaggagatgtgataggctaaagggaaacttgtccttagaaattaggtctaacacgaggttttaggtttaatggtttggtttgtgaaagatt 16487923  T
Q  334 tgtcaccaagatgaaccaataatcccaag-tcgtttttattattatt 379  Q
    |||| ||| ||   ||||||||||||||| ||  |||||||||||||    
T  16487924 tgtcgccatgacagaccaataatcccaagctctcttttattattatt 16487970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 337
Target Start/End: Original strand, 20627423 - 20627525
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggttt-agggtttggtttgtgaatgattt 334  Q
    ||||||||| ||||||| ||| | ||  |||||||| | ||||||||||| |||||| || ||||| ||||||||| | || |||| |||||||||||||    
T  20627423 tgagaccgataggagatgtgataggcttaagagaaactcgtctttagaaactagatctaaaataaggtttaggtttaatggcttggcttgtgaatgattt 20627522  T
Q  335 gtc 337  Q
    |||    
T  20627523 gtc 20627525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 337
Target Start/End: Original strand, 20631314 - 20631416
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggttt-agggtttggtttgtgaatgattt 334  Q
    ||||||||| ||||||| ||| | ||  |||||||| | ||||||||||| |||||| || ||||| ||||||||| | || |||| |||||||||||||    
T  20631314 tgagaccgataggagatgtgataggcttaagagaaactcgtctttagaaactagatctaaaataaggtttaggtttaatggcttggcttgtgaatgattt 20631413  T
Q  335 gtc 337  Q
    |||    
T  20631414 gtc 20631416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 337
Target Start/End: Original strand, 20635922 - 20636024
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggttt-agggtttggtttgtgaatgattt 334  Q
    ||||||||| ||||||| ||| | ||  |||||||| | ||||||||||| |||||| || ||||| ||||||||| | || |||| |||||||||||||    
T  20635922 tgagaccgataggagatgtgataggcttaagagaaactcgtctttagaaactagatctaaaataaggtttaggtttaatggcttggcttgtgaatgattt 20636021  T
Q  335 gtc 337  Q
    |||    
T  20636022 gtc 20636024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 337
Target Start/End: Original strand, 20637794 - 20637896
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggttt-agggtttggtttgtgaatgattt 334  Q
    ||||||||| ||||||| ||| | ||  |||||||| | ||||||||||| |||||| || ||||| ||||||||| | || |||| |||||||||||||    
T  20637794 tgagaccgataggagatgtgataggcttaagagaaactcgtctttagaaactagatctaaaataaggtttaggtttaatggcttggcttgtgaatgattt 20637893  T
Q  335 gtc 337  Q
    |||    
T  20637894 gtc 20637896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 362
Target Start/End: Complemental strand, 8521751 - 8521619
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaat 329  Q
    ||||||||||| ||||||||| ||| | || ||||||||| ||||||||||||| ||   | |||||||| || || |||| | |||||||||||||||     
T  8521751 tcattgagaccaaaaggagatgtgataggctaaagagaaacttgtctttagaaattatgactaacataaggttctaagtttaatggtttggtttgtgaag 8521652  T
Q  330 gatttgtcaccaagatgaaccaataatcccaag 362  Q
    ||||||||  |  || | |||||||||||||||    
T  8521651 gatttgtcgtcgtgacggaccaataatcccaag 8521619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 10311047 - 10310991
Alignment:
Q  238 agaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatcca 294  Q
    ||||||||||||||| ||| | || ||||||||| ||||||||||||||||| ||||    
T  10311047 agaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtcca 10310991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 385
Target Start/End: Original strand, 46274667 - 46274747
Alignment:
Q  305 taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttc 385  Q
    ||||||||  ||||| |||||||| |||||||||||| || | |||||| |||||||  |  |||||||||||||||||||    
T  46274667 taggtttaaagtttgatttgtgaaggatttgtcaccacgacggaccaatgatcccaacgctcttttattattattattttc 46274747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 826851 - 826898
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||||||||| |||||||||  | ||||||||||||||||||||    
T  826851 gtttggtttgtgaaggatttgtcattaggatgaaccaataatcccaag 826898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 828862 - 828909
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||||||||| |||||||||  | ||||||||||||||||||||    
T  828862 gtttggtttgtgaaggatttgtcattaggatgaaccaataatcccaag 828909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 3194343 - 3194304
Alignment:
Q  219 tattgaattacattcattgagaccgaaaggagatatgaaa 258  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  3194343 tattgaaatacattcattgagatcgaaaggagatatgaaa 3194304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 13435430 - 13435501
Alignment:
Q  316 tttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtc-gtttttattattattattttct 386  Q
    ||||||||||||| ||||||||   | |||||||||||||||||||| |   ||||||||||||||||||||    
T  13435430 tttggtttgtgaaggatttgtcgttaggatgaaccaataatcccaaggctccttttattattattattttct 13435501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 39389237 - 39389363
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||| ||| || || || ||| |  ||||||||||||| ||||||||| ||||     
T  39389237 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaagtaggtcaaatataaagttagaggtttagggttt-gtttgtgaaggattc 39389335  T
Q  335 gtcaccaagatgaaccaataatcccaag 362  Q
    ||    | |||||||||||||| |||||    
T  39389336 gttgttatgatgaaccaataattccaag 39389363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 302
Target Start/End: Complemental strand, 8236111 - 8236037
Alignment:
Q  228 acattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataaga 302  Q
    |||||||| ||||||||| ||||||||||||  ||  |||||||| ||| ||||||||||| ||| || ||||||    
T  8236111 acattcatggagaccgaacggagatatgaaataccttagagaaatctgtatttagaaaataaatctaatataaga 8236037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 362
Target Start/End: Complemental strand, 48340094 - 48340048
Alignment:
Q  316 tttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||||||||||| ||||||   |||||||||||||||||||||    
T  48340094 tttggtttgtgaatgacttgtcaattagatgaaccaataatcccaag 48340048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 11994881 - 11994832
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaa 285  Q
    ||||||||||||||||| ||| | || ||||||||| |||||||||||||    
T  11994881 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaa 11994832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 416
Target Start/End: Complemental strand, 15706807 - 15706649
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| | ||||||||||| ||| || || ||||| ||| |||||||  ||||||  |||||||||||||||||   ||||||||||||||||| ||    
T  15706807 aagagaaactagtctttagaaactaggtctaaaataaggttttaggtttaatggtttgtcttgtgaatgatttgtcaattagatgaaccaataatccgaa 15706708  T
Q  362 gtcgtt----tttattattattattttctatcaaacaaaaatccaactttttacctttg 416  Q
    | | ||    |||  | |||||||||||| | ||  ||||||||||||||| |||||||    
T  15706707 ggcttttatcttttcttttattattttcttttaattaaaaatccaacttttaacctttg 15706649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 382
Target Start/End: Original strand, 4313813 - 4313881
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa-gtcgtttttattattattatt 382  Q
    |||||||||||||| || ||||||   |||||||||||||||||||| |   |||||||||||||||||    
T  4313813 gtttggtttgtgaaggacttgtcaattagatgaaccaataatcccaatgctctttttattattattatt 4313881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 6712050 - 6711948
Alignment:
Q  275 gtctttagaaaatagatccaacataagatttaggt-ttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcg-tttttat 372  Q
    ||||||||||| |||||  |||||||||||||||| ||| |||| || ||||||| |||||||||  | || |||||||||||||| || || |||||||    
T  6712050 gtctttagaaa-tagatttaacataagatttaggtattatggtt-ggattgtgaaagatttgtcattatgaggaaccaataatcccgagacgctttttat 6711953  T
Q  373 tatta 377  Q
    |||||    
T  6711952 tatta 6711948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 9005112 - 9005211
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagg-gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||||| ||||||||||  ||| || |||||||| || ||||||||   |||||||||||||||||||| ||   | |||||||||||||||||||    
T  9005112 aagagaaatt-gtctttagaagttaggtctaacataaggttctaggtttaatagtttggtttgtgaatgatttttcgttaggatgaaccaataatcccaa 9005210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 362
Target Start/End: Complemental strand, 23292338 - 23292210
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatt 333  Q
    |||||| ||||| |||| ||| | || ||||||||| ||||| ||||||| ||| || ||||| || ||| |||||||  |||||||||| ||||  |||    
T  23292338 tgagactgaaagtagatgtgataggctaaagagaaacttgtccttagaaattaggtctaacatgaggttttaggtttaatggtttggtttatgaaaaatt 23292239  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||| ||| || |||||||||||| ||||    
T  23292238 tgtcgccatgacgaaccaataatctcaag 23292210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 24058213 - 24058277
Alignment:
Q  275 gtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatttgtc 337  Q
    ||||||||||| ||| || |||||||| ||| |||||||  ||||||||||||||||||||||||    
T  24058213 gtctttagaaactaggtctaacataaggttttaggtttaatggtttggtttgtgaatgatttgtc 24058277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 359
Target Start/End: Complemental strand, 25033925 - 25033843
Alignment:
Q  275 gtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatccc 359  Q
    ||||||||||| |||||  |||||||||||||||| ||||||  | || ||||| |||||||||  | |||||||||||||||||    
T  25033925 gtctttagaaa-tagatttaacataagatttaggtatagggtcagatt-gtgaaagatttgtcattatgatgaaccaataatccc 25033843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 25180764 - 25180664
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagg-gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| ||||||||||||  ||  || ||||||||||| ||||||||   |||| ||||||||| ||||||||||||  ||| |||||| |||||||    
T  25180764 aagagaaacttgtctttagaagttaagtctaacataagattctaggtttaatagttttgtttgtgaaggatttgtcaccataatggaccaatgatcccaa 25180665  T
Q  362 g 362  Q
    |    
T  25180664 g 25180664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 5e-69; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 218 - 385
Target Start/End: Complemental strand, 24221158 - 24220990
Alignment:
Q  218 ctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggt 316  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||    
T  24221158 ctattgaaatacattcattgagaccgaaaggagatatgaaaagccaaagagaaacttgtctttagaaaataggtccaacataagattctaggtttagggt 24221059  T
Q  317 ttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttc 385  Q
    |||||||||||| |||| ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  24221058 ttggtttgtgaaggattggtcaccaagatgaaccaataatccctaggcgtttttattattattattttc 24220990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 236 - 384
Target Start/End: Original strand, 18008604 - 18008753
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||||||| |||||||||| |||||| ||||||||||  || ||||||||||||||||||||  || | |||    
T  18008604 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttaggaaataggtccaacataaagttctaggtttagggtttggtttgcaaagggttt 18008703  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattattatttt 384  Q
    ||||||| |||| ||||||||||||||| || ||||| ||||||| ||||    
T  18008704 gtcaccatgatggaccaataatcccaaggcgcttttaatattattgtttt 18008753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 26854577 - 26854708
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataa-gatttaggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | ||  |||||||| ||||||||||||| ||| ||||| |||| | |||||||||||||||||||||||||| | |||||||    
T  26854577 accgaaaggagatgtgataggcttaagagaaacttgtctttagaaagtaggtccaatataaagttttaggtttagggtttggtttgtgaaaggtttgtca 26854676  T
Q  339 ccaagatgaaccaataatcccaagtcgttttt 370  Q
     |||||||||| |||||||||||| |||||||    
T  26854677 tcaagatgaactaataatcccaagacgttttt 26854708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 230 - 379
Target Start/End: Original strand, 21319919 - 21320071
Alignment:
Q  230 attcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtga 327  Q
    ||||| ||||||||||||||||| ||| | || ||||||||| || |||||||||| |||||| ||||| ||| | ||||||| | ||||||||||||||    
T  21319919 attcactgagaccgaaaggagatgtgataggctaaagagaaaattctctttagaaagtagatctaacataaagttctaggtttaaaggtttggtttgtga 21320018  T
Q  328 atgatttgtcaccaagatgaaccaataatcccaagtcg-tttttattattatt 379  Q
    | | |||||||||| |||| ||||||||||||||| || ||||||||||||||    
T  21320019 agggtttgtcaccatgatggaccaataatcccaaggcgctttttattattatt 21320071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 403
Target Start/End: Original strand, 6280250 - 6280417
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttg 335  Q
    |||||| |||||||||| ||| |||| ||||||||| ||||||||||||| || ||| || |||| |||  |||||||||||| ||||||||| |  |||    
T  6280250 tgagactgaaaggagatgtgataagctaaagagaaacttgtctttagaaagtaaatcaaatataaaattatggtttagggttt-gtttgtgaagggcttg 6280348  T
Q  336 tcaccaagatgaaccaataatcccaagtcg-tttttattattattattttctatcaaacaaaaatccaa 403  Q
    | |   ||||||||||||||||||||| || |||||||| |||||||||||| ||||  ||||||||||    
T  6280349 ttatttagatgaaccaataatcccaaggcgttttttatttttattattttctttcaattaaaaatccaa 6280417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 236 - 403
Target Start/End: Original strand, 26013434 - 26013603
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttta-gggtttggtttgtgaatgatt 333  Q
    ||||| ||||||||||| ||| |  | ||||||||| ||||||||||||| ||| || |||| ||| || |||||||| |||||||| ||||| | ||||    
T  26013434 tgagatcgaaaggagatgtgatagactaaagagaaacttgtctttagaaattaggtctaacacaaggttctaggtttaagggtttggattgtggaggatt 26013533  T
Q  334 tgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaa 403  Q
    |||||||| |||| ||||||||||||||| |  ||||||| |||||||||||| | ||  ||||||||||    
T  26013534 tgtcaccatgatggaccaataatcccaaggctgttttatttttattattttcttttaattaaaaatccaa 26013603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 14161715 - 14161572
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | ||  |||||||| ||||||||||||| ||| |||||||| ||| | |||||||||| ||||||||||||| | ||||| |    
T  14161715 accgaaaggagatgtgataggcttaagagaaacttgtctttagaaagtaggtccaacataaagttctaggtttaggatttggtttgtgaagggtttgtta 14161616  T
Q  339 ccaagatgaaccaat-aatcccaagtcgtttttattattattatt 382  Q
    || |||||||||||| ||||||||  || ||||||||||||||||    
T  14161615 cc-agatgaaccaataaatcccaatgcgcttttattattattatt 14161572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 236 - 361
Target Start/End: Complemental strand, 1990076 - 1989949
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag-ggtttggtttgtgaatgatt 333  Q
    ||||||| ||||||||| ||| | || ||||||||| ||||||||||||| ||| || |||||||  || ||||||||  ||||||||||||||| ||||    
T  1990076 tgagacccaaaggagatgtgataggctaaagagaaacttgtctttagaaattaggtctaacataaagttataggtttaaaggtttggtttgtgaaggatt 1989977  T
Q  334 tgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| || ||||||||||||||||    
T  1989976 tgtcaccatgacgaaccaataatcccaa 1989949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 24342388 - 24342519
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | |||||||| ||| ||||||||||||||||| | |||| |||  || | |||||||||||||||||||||| | ||| |||    
T  24342388 accgaaaggagatgtgataggccaaagataaacttgtctttagaaaataggttcaacgtaaagttcttggtttagggtttggtttgtgaagggtttatca 24342487  T
Q  339 ccaagatgaaccaataatcccaagtcgttttt 370  Q
    ||| || ||| ||||||||||||| |||||||    
T  24342488 ccatgacgaatcaataatcccaagacgttttt 24342519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 385
Target Start/End: Complemental strand, 19791805 - 19791664
Alignment:
Q  246 aggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaaga 344  Q
    ||||||| ||| | || ||||||||| ||||||||||||| ||| |||||||||| ||| ||||||||| ||||| |||||||| ||||| || ||| ||    
T  19791805 aggagatgtgataggctaaagagaaacttgtctttagaaagtaggtccaacataaaattctaggtttagcgtttgatttgtgaaggatttttcgccatga 19791706  T
Q  345 tgaaccaataatcccaagtc-gtttttattattattattttc 385  Q
     |||||||||||||| || |  ||||||||| ||||||||||    
T  19791705 cgaaccaataatcccgaggcactttttattaatattattttc 19791664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 23221221 - 23221088
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcac 339  Q
    ||||||||||||| | | | ||| |||||||| ||||||||||||| || || ||| |||| |||  | ||||||||||| ||||||||||| |||| |     
T  23221221 accgaaaggagatgtaataggcctaagagaaacttgtctttagaaagtaaattcaatataaaattccgatttagggtttg-tttgtgaatgacttgttat 23221123  T
Q  340 caagatgaaccaataatcccaagtcgtttttatta 374  Q
      ||||||||||||||||||||| || ||||||||    
T  23221122 ttagatgaaccaataatcccaaggcgcttttatta 23221088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 284 - 384
Target Start/End: Original strand, 15636558 - 15636656
Alignment:
Q  284 aaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattt 383  Q
    ||||||||| |||||||||||||| | |||| ||||| ||||||| |||||||||  | | ||||||||||||||||||  |||||| ||||||||||||    
T  15636558 aaatagatctaacataagatttagatatagg-tttgggttgtgaaagatttgtcattatgctgaaccaataatcccaaggtgttttt-ttattattattt 15636655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 378
Target Start/End: Complemental strand, 6570177 - 6570060
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagg-gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| ||||||||||||  |||||| |||||||| || ||||||||   |||||||||||||| ||||||||   | |||||||||||||||||||    
T  6570177 aagagaaacttgtctttagaagttagatctaacataaggttctaggtttaatagtttggtttgtgaaggatttgtcgttatgatgaaccaataatcccaa 6570078  T
Q  362 gtc-gtttttattattat 378  Q
    | |  |||||||||||||    
T  6570077 gactctttttattattat 6570060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 9318367 - 9318468
Alignment:
Q  263 aaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttagggttt-ggtttgtgaatgatttgtcaccaagatgaaccaataatccca 360  Q
    ||||||||||  ||||||||||| ||| || | |||||| ||| ||||||| ||||| |||||||||| |||||||||  | ||||||||||||||||||    
T  9318367 aaagagaaatcggtctttagaaattaggtctagcataaggttttaggtttaaggttttggtttgtgaaggatttgtcattatgatgaaccaataatccca 9318466  T
Q  361 ag 362  Q
    ||    
T  9318467 ag 9318468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 18959789 - 18959852
Alignment:
Q  340 caagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaa 403  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||  ||||  ||||||||||    
T  18959789 caagatgaaccaataatcccaagacgcttttattattaatattttcattcaattaaaaatccaa 18959852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 22818786 - 22818833
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||||||||| ||||||||||||||| |||||||| ||||||||    
T  22818786 gtttggtttgtgaaggatttgtcaccaagacgaaccaatgatcccaag 22818833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 24967756 - 24967884
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat---aagatttaggtttagggtttggtttgtgaatgat 332  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||| || |||||| ||   ||| || || ||||||||||  |||||||| |||    
T  24967756 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaagtaaatccaatataaaaagtttaagatttagggttt-atttgtgaaggat 24967854  T
Q  333 ttgtcaccaagatgaaccaataatcccaag 362  Q
    | || |  | ||||||||||||||||||||    
T  24967855 tcgttattatgatgaaccaataatcccaag 24967884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 24035266 - 24035313
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||||||||| |||||||||||| || |||||||| ||||||||    
T  24035266 gtttggtttgtgaaggatttgtcaccatgacgaaccaatgatcccaag 24035313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 391
Target Start/End: Original strand, 23456077 - 23456241
Alignment:
Q  228 acattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgt 325  Q
    ||||||| |||||||||||| |||| ||| || | || | |||| ||||||||| ||| ||| || |||||||  || || ||||| ||||| |||||||    
T  23456077 acattcactgagaccgaaagaagatgtgataaactaagg-gaaacttgtctttaaaaattaggtctaacataatgttctatgtttaaggttttggtttgt 23456175  T
Q  326 gaatgatttgtcaccaagatgaaccaataatcccaagtc-gtttttattattattattttctatcaa 391  Q
    ||| | |||||||  | |||||||||||||||||||| |  |||||||||||| |||||||| ||||    
T  23456176 gaagggtttgtcattatgatgaaccaataatcccaagactctttttattatta-tattttctttcaa 23456241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 42486514 - 42486595
Alignment:
Q  104 aaatgctaacttgtgtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||  |||||||  ||||| | ||||||| |||| ||||||||||||  ||| |||||||||||| ||||||||||||    
T  42486514 aaatgctattttgtgtccttaatgcataagttaaggagt-aaaagtagaaatgttttgttgtaattaatgcatttgaatttaa 42486595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 17958691 - 17958739
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttga 180  Q
    ||||||||||||||||| ||||||||||||  ||||||||||| ||||||    
T  17958691 aagttaatgagtcaaaa-tagaaataatttgatgtaattaatgcatttga 17958739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 29004135 - 29004184
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaa 285  Q
    ||||||||||||||||| ||| | || ||||||||| |||||||||||||    
T  29004135 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaa 29004184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 5957156 - 5957096
Alignment:
Q  104 aaatgctaacttgtgtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattg 164  Q
    ||||| ||||||||||   ||| ||| |||||||||| |||| ||||||||||||||||||    
T  5957156 aaatgttaacttgtgttcttaaggtacaagttaatgaatcaatagtagaaataatttattg 5957096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 379
Target Start/End: Original strand, 15760109 - 15760228
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagg-gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| |||||||||||   ||| || |||||||| || ||||||||   |||||||||||||| | |||||||  | || ||||||||||||||||    
T  15760109 aagagaaacttgtctttagatgttaggtctaacataaggttctaggtttaatagtttggtttgtgaagggtttgtcattatgacgaaccaataatcccaa 15760208  T
Q  362 gtcg--tttttattattatt 379  Q
    | ||  ||||||||||||||    
T  15760209 gacgcctttttattattatt 15760228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 204 - 392
Target Start/End: Original strand, 24166730 - 24166918
Alignment:
Q  204 aataagtgtgggttctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagat 303  Q
    ||||||||||| | |||  ||| |||||||| ||||||||| || |||| |||||| ||||||||||| |||||||||||||||||| ||||| ||||||    
T  24166730 aataagtgtggttgctaacgaaatacattcagtgagaccgagagaagatgtgaaaaaccaaagagaaacttgtctttagaaaatagaaccaacgtaagat 24166829  T
Q  304 ttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaa 392  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  24166830 ttaggtttagggtttggtttgtgaaggatttgtcaccaagatgaaccaataatcccaagacgtttttattattgttattttctatcaaa 24166918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 219 - 380
Target Start/End: Original strand, 23114740 - 23114901
Alignment:
Q  219 tattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggttt 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  23114740 tattgaaatacattcattgagaccgaaaggagatatgaaaagccaaagagaaacttgtctttagaaaatagatccaacgtaagatttatgtttagggttt 23114839  T
Q  319 ggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattatta 380  Q
    |||||||||| ||||||| | ||||||||||||||||||||||  || |||||| |||||||    
T  23114840 ggtttgtgaaagatttgttatcaagatgaaccaataatcccaatgcggttttatcattatta 23114901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 241 - 379
Target Start/End: Original strand, 16677584 - 16677724
Alignment:
Q  241 ccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcac 339  Q
    |||||||||||| ||| | || ||||||||| ||||||||||||||||| ||||||||||  || |||||||||||||||||||||||| ||||||||||    
T  16677584 ccgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaagttctaggtttagggtttggtttgtgaaggatttgtcac 16677683  T
Q  340 caagatgaaccaataatcccaagtcg-tttttattattatt 379  Q
    || || ||||||||||||||||| ||  |||||||||||||    
T  16677684 catgacgaaccaataatcccaagacgccttttattattatt 16677724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 264 - 370
Target Start/End: Original strand, 20738872 - 20738978
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| ||||| ||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||     
T  20738872 aagagaaacttgtctttagaaattaggtccaatataaagtttaggtttagggtttggtttgtgaaggatttgtcaccaagatgaaccaataatctcaagg 20738971  T
Q  364 cgttttt 370  Q
    |||||||    
T  20738972 cgttttt 20738978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 240 - 379
Target Start/End: Original strand, 12411032 - 12411174
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||||||| |  |  |||||||| ||||||||||||| | | ||||||||||  || |||||||||||||||||||||||| | |||||||    
T  12411032 accgaaaggagatatgatagacttaagagaaacttgtctttagaaagtgggtccaacataaagttctaggtttagggtttggtttgtgaagggtttgtca 12411131  T
Q  339 ccaagatgaaccaataatcccaagtcg--tttttattattatt 379  Q
     ||||||||||||||||||||||| ||  ||||||||||||||    
T  12411132 tcaagatgaaccaataatcccaaggcgcctttttattattatt 12411174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 240 - 408
Target Start/End: Original strand, 22171291 - 22171465
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||| | ||| | || ||||||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||||| ||||||| |    
T  22171291 accgaaaggaggtgtgataggctaaagagaaatttgtctttagaaaataggtccaacataaagttctaggtttagggtttggtttgtgaaggatttgtga 22171390  T
Q  339 cca----agatgaaccaataatcccaagtcg-tttttattattattattttctatcaaacaaaaatccaactttt 408  Q
    |||     || ||||||||||||||||  || ||||||||||| |||||||  || ||||||||  |||||||||    
T  22171391 ccatgacggacgaaccaataatcccaaagcgctttttattattgttattttagattaaacaaaatcccaactttt 22171465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 289
Target Start/End: Complemental strand, 23029175 - 23029104
Alignment:
Q  218 ctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatag 289  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||    
T  23029175 ctattgaaatacattcattgagaccgaaatgagatatgaaaagccaaagagaaacttgtatttagaaaatag 23029104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 378
Target Start/End: Complemental strand, 20724437 - 20724292
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaatgatt 333  Q
    ||||| ||||||||||| ||| | || ||||||||| ||||||||||||| ||| || |||||||  || |||||||| ||||| |||||||||| ||||    
T  20724437 tgagaacgaaaggagatgtgataggctaaagagaaacttgtctttagaaagtaggtctaacataaatttctaggtttaaggttttggtttgtgaaggatt 20724338  T
Q  334 tgtcaccaagatgaaccaataatcccaagtc-gtttttattattat 378  Q
    |||||  | |||||||||||||||||||| |  |||||||||||||    
T  20724337 tgtcattatgatgaaccaataatcccaaggctctttttattattat 20724292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 236 - 362
Target Start/End: Complemental strand, 17408317 - 17408189
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||  ||||||||||||| ||| || |||||||| || ||||||| | ||||||||||||||| | ||    
T  17408317 tgagaccgaaaggagatgtgataggctaaagagaatcttgtctttagaaattaggtctaacataaggttctaggtttaaaggtttggtttgtgaagggtt 17408218  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| |||  |||||||||||||||    
T  17408217 tgtcaccatgatagaccaataatcccaag 17408189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 21833428 - 21833556
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||||||| | || ||||||||| ||||| ||||||| ||| || ||||| | | ||||||||| | ||||||||||||||| ||||    
T  21833428 tgagaccgaaaggagatatgataggctaaagagaaacttgtccttagaaattaggtctaacatgaggttttaggtttaatggtttggtttgtgaaagatt 21833527  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||| ||| || | |||||||||||||||    
T  21833528 tgtcgccatgacggaccaataatcccaag 21833556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 378
Target Start/End: Original strand, 22949064 - 22949219
Alignment:
Q  227 tacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggt-tt 323  Q
    |||||||| ||| ||||||||||||| ||| | || ||||||||| ||||||||||||| ||| || ||||| ||| | ||||||| ||| |||||| ||    
T  22949064 tacattcactgataccgaaaggagatgtgatatgcaaaagagaaacttgtctttagaaattaggtctaacataaagttctaggtttaaggttttggtgtt 22949163  T
Q  324 gtgaatgatttgtcaccaagatgaaccaataatcccaagtc-gtttttattattat 378  Q
    ||||| |||||||||  | |||||||||||||||||||| |  |||||||||||||    
T  22949164 gtgaaggatttgtcattatgatgaaccaataatcccaaggctctttttattattat 22949219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 24165755 - 24165881
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||| || |||||| || ||| || ||||||||||||| ||||||||| ||||     
T  24165755 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaagtaaatccaatataaagtttaaggtttagggttt-gtttgtgaaggattc 24165853  T
Q  335 gtcaccaagatgaaccaataatcccaag 362  Q
    || |  | ||||||||||||||||||||    
T  24165854 gttattatgatgaaccaataatcccaag 24165881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 379
Target Start/End: Complemental strand, 23029106 - 23029033
Alignment:
Q  305 taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattatt 379  Q
    |||||||||| ||||||||||||| ||||| |||||||||||||||||| | |||| | ||||||||||||||||    
T  23029106 taggtttaggatttggtttgtgaaagatttatcaccaagatgaaccaat-accccagggcgtttttattattatt 23029033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 23435827 - 23435953
Alignment:
Q  238 agaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatttg 335  Q
    ||||||||||||||| ||| | || |||| |||| ||||| ||||||| ||| || ||||| || ||| |||||||  ||||||||||||||| ||||||    
T  23435827 agaccgaaaggagatgtgataggctaaagtgaaacttgtccttagaaattaggtctaacatgaggttttaggtttaatggtttggtttgtgaaagatttg 23435926  T
Q  336 tcaccaagatgaaccaataatcccaag 362  Q
    || ||| || | |||||||||||||||    
T  23435927 tcgccatgacggaccaataatcccaag 23435953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 23447194 - 23447320
Alignment:
Q  238 agaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatttg 335  Q
    ||||||||||||||| ||| | || |||| |||| ||||| ||||||| ||| || ||||| || ||| |||||||  ||||||||||||||| ||||||    
T  23447194 agaccgaaaggagatgtgataggctaaagtgaaacttgtccttagaaattaggtctaacatgaggttttaggtttaatggtttggtttgtgaaagatttg 23447293  T
Q  336 tcaccaagatgaaccaataatcccaag 362  Q
    || ||| || | |||||||||||||||    
T  23447294 tcgccatgacggaccaataatcccaag 23447320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 267 - 356
Target Start/End: Original strand, 31415014 - 31415104
Alignment:
Q  267 agaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataat 356  Q
    ||||| ||||||||||||| ||| | ||| ||||  || |||||||| ||||||||||||||| | ||||||| |||||||||||||||||    
T  31415014 agaaacttgtctttagaaagtaggtacaatataaagttctaggtttaaggtttggtttgtgaacggtttgtcatcaagatgaaccaataat 31415104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 384
Target Start/End: Complemental strand, 31757695 - 31757576
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| || || ||||  |||||||||||||||| ||||||||| ||||||| |  | ||||||||||||||| |||      
T  31757695 aagagaaacttgtctttagaaagtagttcgaatataaagtttaggtttagggttt-gtttgtgaa-gatttgttattatgatgaaccaataatctcaatg 31757598  T
Q  364 cg-tttttattattattatttt 384  Q
    || |||||||||||||| ||||    
T  31757597 cgctttttattattattctttt 31757576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 20968268 - 20968368
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| | ||||||||||| ||| || || ||||| ||| |||||||  ||||||| |||||||||||||||||   ||||||||||||||||||||    
T  20968268 aagagaaactcgtctttagaaactaggtctaaaataaggttttaggtttaatggtttggcttgtgaatgatttgtcaattagatgaaccaataatcccaa 20968367  T
Q  362 g 362  Q
    |    
T  20968368 g 20968368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 21382779 - 21382907
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag-ggtttggtttgtgaatgatt 333  Q
    |||||||||||  |||| ||| | || ||||| ||| ||||||||||||| | | || |||||||| || ||||||||  ||||||||||||||| ||||    
T  21382779 tgagaccgaaaacagatgtgataggctaaagaaaaacttgtctttagaaattgggtctaacataaggttctaggtttaatggtttggtttgtgaaggatt 21382878  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||| ||| || | |||||||||||||||    
T  21382879 tgtcgccatgacggaccaataatcccaag 21382907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 22942855 - 22942927
Alignment:
Q  228 acattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataa 300  Q
    ||||||| ||||||||||||||||| ||| | || ||||||||| ||||||||||||| ||| || |||||||    
T  22942855 acattcactgagaccgaaaggagatgtgatatgctaaagagaaacttgtctttagaaattaggtctaacataa 22942927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 414
Target Start/End: Complemental strand, 22000077 - 21999919
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagg-gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| ||||||||||||  ||| || |||||||| || ||||||||   |||||||||||||| | |||||||||| || |||||||| |||| ||    
T  22000077 aagagaaacttgtctttagaagttaggtctaacataaggttctaggtttaatagtttggtttgtgaagggtttgtcaccatgacgaaccaatgatcctaa 21999978  T
Q  362 g-----tcgttt-ttattattattattttctatcaaacaaaaatccaactttttacctt 414  Q
    |     || ||| |||||||| ||||||||| | |||||||||| ||||||| ||||||    
T  21999977 gacacctcttttattattattgttattttcttttaaacaaaaatacaactttctacctt 21999919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 362
Target Start/End: Complemental strand, 25485975 - 25485918
Alignment:
Q  305 taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||||| ||||||| |||||| ||||| || |||||||||||||||||    
T  25485975 taggtttaaggtttgggttgtgaaggatttgccaccatgacgaaccaataatcccaag 25485918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 141322 - 141377
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||||||||||  |||||| ||||||| || |||||||||||| ||||||||||||    
T  141322 aagttaatgagctaaaagtggaaataaattgttgtaattaatgcatttgaatttaa 141377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 391
Target Start/End: Original strand, 12322813 - 12322931
Alignment:
Q  275 gtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtc-gttttta 371  Q
    ||||||||||| ||| || |||||||| || |||||||| ||||| |||||||||| |||||| |   | |||||||||||||||||||| |  ||||||    
T  12322813 gtctttagaaattaggtctaacataaggttctaggtttaaggttttggtttgtgaaagatttgccgttatgatgaaccaataatcccaaggctcttttta 12322912  T
Q  372 ttattattattttctatcaa 391  Q
    |||||| |||||||| ||||    
T  12322913 ttatta-tattttctttcaa 12322931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 403
Target Start/End: Original strand, 19890350 - 19890409
Alignment:
Q  344 atgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaa 403  Q
    ||||||||||||||||||| || ||||||| |||||||||||| | ||  ||||||||||    
T  19890350 atgaaccaataatcccaaggcgcttttatttttattattttcttttaattaaaaatccaa 19890409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 386
Target Start/End: Complemental strand, 20915547 - 20915421
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggttt--agggtttggtttgtgaatgatttgtcaccaagatgaaccaataatccca 360  Q
    |||||||| ||||||||||||  ||| || |||||||| || |||||||  |  |||||||||||||||||||||||   | ||| ||||||||||||||    
T  20915547 aagagaaacttgtctttagaagttaggtctaacataaggttctaggtttgaatagtttggtttgtgaatgatttgtcgttaggatcaaccaataatccca 20915448  T
Q  361 agtcgttt-ttattattattattttct 386  Q
    || | ||| || || ||||||||||||    
T  20915447 aggcttttattttttttattattttct 20915421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 29429621 - 29429676
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||| ||||||||||| |||||| ||| |||||||||||  ||||||||||||    
T  29429621 aagttaaagagtcaaaagtggaaatattttgttgtaattaatacatttgaatttaa 29429676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 263 - 379
Target Start/End: Complemental strand, 34222672 - 34222555
Alignment:
Q  263 aaagagaaatttgtctttagaaaatagatccaacataagattta-ggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    ||||||||| ||||||||||||| ||| || || ||||  |||| ||||||||||||| |||||||| ||||  | |  | |||||||||||||||||||    
T  34222672 aaagagaaacttgtctttagaaagtaggtcaaatataaagtttaaggtttagggtttg-tttgtgaaggattcattattatgatgaaccaataatcccaa 34222574  T
Q  362 gtc-gtttttattattatt 379  Q
    | |  ||||||||||||||    
T  34222573 gactctttttattattatt 34222555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 186
Target Start/End: Original strand, 36187500 - 36187582
Alignment:
Q  104 aaatgctaacttgtgtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||||||||| |  |||  || |||||||||| | ||||||| ||||| ||| |||||||||||| ||||| ||||||    
T  36187500 aaatgctaacttgtgcctttaagatacaagttaatgaattaaaagtaaaaatattttgttgtaattaatgcatttgtatttaa 36187582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 301
Target Start/End: Complemental strand, 20169061 - 20168996
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataag 301  Q
    ||||||||||||||||| ||| | || |||||||||  |||||||||||| ||| || ||||||||    
T  20169061 tgagaccgaaaggagatgtgataggctaaagagaaacctgtctttagaaattaggtctaacataag 20168996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 227 - 380
Target Start/End: Original strand, 168685 - 168838
Alignment:
Q  227 tacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtg 326  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  168685 tacattcattgagaccgaaaggagatatgaaaagccaaagataaacttgtgtttagaaaatagatccaacgcaagatttaggtttagggtttggtttgtg 168784  T
Q  327 aatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattatta 380  Q
    || ||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  168785 aaggatttgtcaccaagaggaaccaataatcccaaggcatttttattattatta 168838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 1e-57; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 204 - 380
Target Start/End: Complemental strand, 24371061 - 24370884
Alignment:
Q  204 aataagtgtgggttctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagat 303  Q
    |||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| || |||    
T  24371061 aataggtgtggttgctattgaaatacattcattgagaccgaaaggagatatgaaaagccaaagagaaacttgtctttagaaaataggttcaacgtaggat 24370962  T
Q  304 t-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattatta 380  Q
    | |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  24370961 tctaggttgagagtttggtttgtgaaggatttgtcaccaagatgaaccaataatcccaaggcatttttattattatta 24370884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 232 - 378
Target Start/End: Original strand, 24322292 - 24322439
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatg 330  Q
    |||||||||| |||||||||| |||   |  ||||||||| ||||||||| ||||||| ||||||||||  || |||||||||||||||||||||||| |    
T  24322292 tcattgagactgaaaggagatgtgatgggataaagagaaacttgtctttaaaaaataggtccaacataatgttctaggtttagggtttggtttgtgaagg 24322391  T
Q  331 atttgtcaccaagatgaaccaataatcccaagtcgtttttattattat 378  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||||    
T  24322392 atttgtcaccatgatgaaccaataatcccaaggcgcttttattattat 24322439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 240 - 403
Target Start/End: Complemental strand, 19012594 - 19012430
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| |||| ||||||||| ||||||||||||||||| |||||||| ||| | |||||||| |||||| |||||||| |||||||||    
T  19012594 accgaaaggagatgtgataagctaaagagaaacttgtctttagaaaataggtccaacataaagttctaggttta-ggtttgatttgtgaaggatttgtca 19012496  T
Q  339 ccaagatgaaccaataatcccaagtc-gtttttattattattattttctatcaaacaaaaatccaa 403  Q
    ||| || ||||||||||||||||| |  ||||||||||| ||| ||| | ||||  ||||||||||    
T  19012495 ccatgacgaaccaataatcccaagacactttttattatttttactttatttcaattaaaaatccaa 19012430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 264 - 382
Target Start/End: Complemental strand, 24365878 - 24365759
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| ||||| ||||  |||||||||||||||||||||| ||| | ||||||| |||||||||||||||||||||||     
T  24365878 aagagaaacttgtctttagaaagtaggtccaatataaagtttaggtttagggtttggtttgggaaagttttgtcatcaagatgaaccaataatcccaaga 24365779  T
Q  364 c-gtttttattattattatt 382  Q
    |  |||||||||||||||||    
T  24365778 cactttttattattattatt 24365759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 235 - 379
Target Start/End: Complemental strand, 21131649 - 21131502
Alignment:
Q  235 ttgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatt 333  Q
    |||| ||||||||||||| ||| | ||  |||||||| ||||||||||||| | | ||||||||||  || |||||||||||||||||||||||| | ||    
T  21131649 ttgaaaccgaaaggagatgtgataggcttaagagaaaattgtctttagaaagtgggtccaacataaagttctaggtttagggtttggtttgtgaagggtt 21131550  T
Q  334 tgtcaccaagatgaaccaataatcccaagtcg--tttttattattatt 379  Q
    ||||| | ||||||||||||||||||||| ||  ||||||||||||||    
T  21131549 tgtcatctagatgaaccaataatcccaaggcgcctttttattattatt 21131502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 240 - 358
Target Start/End: Original strand, 16440279 - 16440398
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | ||  |||||||| ||||||||||||| | | |||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  16440279 accgaaaggagatgtgataggcttaagagaaacttgtctttagaaagtgggtccaacataaaattctaggtttagggtttggtttgtgaaggatttgtca 16440378  T
Q  339 ccaagatgaaccaataatcc 358  Q
    ||| ||  ||||||||||||    
T  16440379 ccatgacaaaccaataatcc 16440398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 378
Target Start/End: Complemental strand, 19121701 - 19121554
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatg 330  Q
    ||||||| ||||||||||||| ||| | || |||||||||  |||||||||||||||  || |||||||  || || |||||||||||||||| |||| |    
T  19121701 tcattgaaaccgaaaggagatgtgataggctaaagagaaacatgtctttagaaaataagtcaaacataaagttctaagtttagggtttggtttttgaagg 19121602  T
Q  331 atttgtcaccaagatgaaccaataatcccaagtcgtttttattattat 378  Q
    ||||||||| | || |||||||||||| |||| || ||||||||||||    
T  19121601 atttgtcactatgacgaaccaataatctcaaggcgattttattattat 19121554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 384
Target Start/End: Original strand, 539697 - 539844
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttg 335  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||| || |||||| |||| |||  ||||||| |||| ||||| ||| || |||    
T  539697 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaagtaaatccaatataaaattatggtttagagttt-gtttgcgaaggacttg 539795  T
Q  336 tcaccaagatgaaccaataatcccaagtcgtttttattattattatttt 384  Q
    | |   ||||||||||||||||||||| || ||||||| ||||||||||    
T  539796 ttatttagatgaaccaataatcccaaggcgcttttatttttattatttt 539844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 236 - 384
Target Start/End: Complemental strand, 24609658 - 24609509
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgattt 334  Q
    ||||||| ||||||||| ||| | || ||||||||| ||||||||||||||||| |||||||| ||| | ||||| ||||||||||||| ||||   |||    
T  24609658 tgagaccaaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaagttctaggtatagggtttggtttatgaagagttt 24609559  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattattatttt 384  Q
     |||||| || | ||||||||| ||||| || |||| |||||||| ||||    
T  24609558 ctcaccatgacggaccaataattccaagacgcttttcttattattgtttt 24609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 408
Target Start/End: Original strand, 20852626 - 20852800
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||| ||||| ||| | || | || |||| |||||||||||||||||  |||||||||| || |||||||| |  |||||||||||| |||||    
T  20852626 tgagaccgaaaagagatgtgataggctatagtgaaacttgtctttagaaaataggcccaacataaggttataggtttaagtattggtttgtgaaagattt 20852725  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatc-aaacaaaaatccaactttt 408  Q
    ||  ||| || ||||||||||||| ||   | |||||||||| ||||||||| || |||||||||| ||| ||||    
T  20852726 gtttccatgacgaaccaataatcctaaagtgcttttattattgttattttctttcaaaacaaaaatacaaatttt 20852800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 391
Target Start/End: Complemental strand, 24177283 - 24177126
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||| ||| || |||||||| || ||||||| | ||||||||||||||| | ||    
T  24177283 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaattaggtctaacataaggttctaggtttaaaggtttggtttgtgaagggtt 24177184  T
Q  334 tgtcaccaagatgaaccaataatcccaagtc-gtttttattattattattttctatcaa 391  Q
    |||||  | ||||||| |||||||| ||| |  |||||||||||| |||||||| ||||    
T  24177183 tgtcattatgatgaacaaataatccaaaggctctttttattatta-tattttctttcaa 24177126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 378
Target Start/End: Complemental strand, 29576935 - 29576790
Alignment:
Q  237 gagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtgaatgattt 334  Q
    |||||||||||||||| ||| |  | ||||||||||||||| ||||||| ||| || ||||| ||| | ||||||| ||| ||||||||||||| | |||    
T  29576935 gagaccgaaaggagatgtgatagactaaagagaaatttgtcattagaaagtaggtctaacataaagttataggtttaaggttttggtttgtgaagggttt 29576836  T
Q  335 gtcaccaagatgaaccaataatcccaag--tcgtttttattattat 378  Q
    ||||  | ||||||||||||||||||||  || |||||||||||||    
T  29576835 gtcattatgatgaaccaataatcccaaggctcttttttattattat 29576790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 11391600 - 11391672
Alignment:
Q  228 acattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataa 300  Q
    ||||||| ||||||||||||||||||||| | || ||||||||| ||||||||||||| |||||| |||||||    
T  11391600 acattcactgagaccgaaaggagatatgatatgctaaagagaaacttgtctttagaaattagatctaacataa 11391672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 11408261 - 11408333
Alignment:
Q  228 acattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataa 300  Q
    ||||||| ||||||||||||||||||||| | || ||||||||| ||||||||||||| |||||| |||||||    
T  11408261 acattcactgagaccgaaaggagatatgatatgctaaagagaaacttgtctttagaaattagatctaacataa 11408333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 415
Target Start/End: Complemental strand, 22558391 - 22558236
Alignment:
Q  263 aaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||| |||| ||||||||||||||||| | ||||||||| || ||| |||||||||||||||||||| ||||||||   | || ||| |||||||| |||    
T  22558391 aaagtgaaacttgtctttagaaaataggttcaacataaggttctagatttagggtttggtttgtgaaagatttgtctttatgacgaatcaataatcgcaa 22558292  T
Q  362 gtcg-tttttattattattattttctatcaaacaaaaatcc-aactttttaccttt 415  Q
      || ||||||||||| |||||||   ||||| |||||||| ||||||||| ||||    
T  22558291 aacgctttttattattgttattttaattcaaataaaaatccaaactttttaacttt 22558236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 236 - 382
Target Start/End: Original strand, 23704780 - 23704927
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||||||| |||||||||||||  || || ||||| ||| | |||||||| |||||| |||| ||| | |||    
T  23704780 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaagaaggtctaacataaagttctaggtttaaggtttgatttgagaagggttt 23704879  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattattatt 382  Q
    || |||| || | ||||||||||| ||| |  ||||||||||||||||    
T  23704880 gttaccatgacgtaccaataatcctaaggctcttttattattattatt 23704927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 44998746 - 44998871
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||||||||||||||||||||| || || ||| || ||| || ||||||||||||| |||| |||| ||||     
T  44998746 tgagaccgaaaggagatgtgatatgctaaagagaaatttgtctttagaaagtaaattcaatataaagtttaaggtttagggttt-gtttctgaaggattc 44998844  T
Q  335 gtcaccaagatgaaccaataatcccaa 361  Q
    || |  | |||||||||||||||||||    
T  44998845 gttattatgatgaaccaataatcccaa 44998871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 41653171 - 41653057
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| || || |||| | |||||||||||||||| |||||||| | |||||||   ||||||||||||||||||| |     
T  41653171 aagagaaacttgtctttagaaagtaggtcaaatataa-agttaggtttagggtttg-tttgtgaagggtttgtcattgagatgaaccaataatcccagga 41653074  T
Q  364 cg-tttttattattatt 379  Q
    || ||||||||||||||    
T  41653073 cgctttttattattatt 41653057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 382
Target Start/End: Complemental strand, 21344123 - 21343976
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | |  ||||||||| |||||||||||||  || || |||||||  || |||||||| |||||| |||| ||| | |||    
T  21344123 tgagaccgaaaggagatgtgatagggtaaagagaaacttgtctttagaaagaaggtctaacataaagttctaggtttaaggtttgatttgagaagggttt 21344024  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattattatt 382  Q
    ||||||| || | |||||| |||| ||| |  ||||||||||||||||    
T  21344023 gtcaccatgacggaccaatgatcctaaggctcttttattattattatt 21343976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 264 - 382
Target Start/End: Complemental strand, 25858147 - 25858031
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| |||| |||||| | ||| ||||| ||||  ||||||||| ||||||  |||||||| |  |||||| |||||||||||||||||||||||     
T  25858147 aagagaaaattgtttttagacagtaggtccaatataaagtttaggtttggggtttc-tttgtgaagggcttgtcatcaagatgaaccaataatcccaagg 25858049  T
Q  364 cgtttttattattattatt 382  Q
    || ||||||| ||||||||    
T  25858048 cgcttttatt-ttattatt 25858031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 186
Target Start/End: Original strand, 929007 - 929092
Alignment:
Q  101 gggaaatgctaacttgtgtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||||||| |||||||||||  |||   | ||||||| |||||||||||||||||| ||| ||||||| |||| ||||||||||||    
T  929007 gggaaatgttaacttgtgtccttaagacacaagttaaagagtcaaaagtagaaatattttgttgtaatcaatgcatttgaatttaa 929092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 23341065 - 23341193
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||| ||||||||| ||| || |||||||| || ||||||| | ||||| ||||||||| ||||    
T  23341065 tgagaccgaaaggagatgtgataggctaaagagaaacttgcctttagaaattaggtctaacataaggttctaggtttaaaggttttgtttgtgaaggatt 23341164  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    || |  || || | |||||||||||||||    
T  23341165 tgccgtcatgacggaccaataatcccaag 23341193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 15215514 - 15215569
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||||||||||||||||||||  || ||| |||||||| ||||||||||||    
T  15215514 aagttaatgagtcaaaagtagaaatatattgttgaaattaatgcatttgaatttaa 15215569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 294 - 396
Target Start/End: Complemental strand, 31590102 - 31590003
Alignment:
Q  294 aacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaac 393  Q
    |||||||||||||| | |||| ||||| |||||| ||||||||||  | ||||||||||||||| | || || |||  ||||||||||||| ||||||||    
T  31590102 aacataagatttagatatagg-tttggattgtgagtgatttgtcattatgatgaaccaataatctcgaggcgcttt--ttattattattttatatcaaac 31590006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 379
Target Start/End: Complemental strand, 30948843 - 30948699
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | ||  |||||||| ||||||||||||| ||| || || || ||| |  ||||||||||||| ||||||||| ||||     
T  30948843 tgagaccgaaaggagatgtgataggctcaagagaaacttgtctttagaaagtaggtcaaatataaagttagaggtttagggttt-gtttgtgaaggattc 30948745  T
Q  335 gtcaccaagatgaaccaataatcccaagtc-gtttttattattatt 379  Q
    ||    | |||||||||||||||||||| |  ||||||||||||||    
T  30948744 gttgttatgatgaaccaataatcccaaggctctttttattattatt 30948699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 3903710 - 3903763
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||||||||||||| |||||||||||  || |||||||||||| ||||||||||||    
T  3903710 aagttaatgagtcagaagtagaaata--ttgttgtaattaatgcatttgaatttaa 3903763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 16133759 - 16133659
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagg-gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| | ||||||||||| ||| || |||||||| || || ||||||  |||||||||||||| || ||||||   ||||||||||||||||||||    
T  16133759 aagagaaactcgtctttagaaattaggtctaacataaggttataagtttagtagtttggtttgtgaaggacttgtcaattagatgaaccaataatcccaa 16133660  T
Q  362 g 362  Q
    |    
T  16133659 g 16133659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 29563693 - 29563821
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatt 333  Q
    ||||| |||||||| || ||| | || ||||||||| ||||| ||||||| ||| || ||||| || ||| |||||||  |||||| |||||||| ||||    
T  29563693 tgagatcgaaaggatatgtgataggctaaagagaaacttgtccttagaaattaggtctaacatgaggttttaggtttaatggtttgttttgtgaaagatt 29563792  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||| ||| || | |||||||||||||||    
T  29563793 tgtcgccatgacggaccaataatcccaag 29563821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 25038425 - 25038378
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||||||||| |||||||||||| |||| |||||| ||||||||    
T  25038425 gtttggtttgtgaaggatttgtcaccaggatggaccaatgatcccaag 25038378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 32140401 - 32140528
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||||| ||||||| ||| || ||||| ||| ||||||||| | || ||||||| |||| ||||    
T  32140401 tgagaccgaaaggagatgtgataggctaaagagaaacttgtccttagaaattaggtctaacatgaagttttaggtttaatggcttggtttatgaaagatt 32140500  T
Q  334 tgtcaccaagatgaaccaataatcccaa 361  Q
    | || ||| || | | ||||||||||||    
T  32140501 tatcgccatgacggaacaataatcccaa 32140528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 378
Target Start/End: Original strand, 36684807 - 36684946
Alignment:
Q  242 cgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaatgatttgtcac 339  Q
    |||||||| |||||| | || |||||||||   || |||||||| ||| || |||||||| || ||| |||| ||||| |||||||||| ||||||||      
T  36684807 cgaaaggaaatatgagaggctaaagagaaaccggtttttagaaattaggtctaacataaggttctagatttaaggttttggtttgtgaaggatttgtcgt 36684906  T
Q  340 caagatgaaccaataatcccaagtc-gtttttattattat 378  Q
     | |||||||||||||||||||| |  |||||||||||||    
T  36684907 tatgatgaaccaataatcccaaggctctttttattattat 36684946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 12776306 - 12776260
Alignment:
Q  139 gagtcaaaagtagaaataatttattgtaattaatgaatttgaattta 185  Q
    |||||||||||||||||| | ||||||||| |||| |||||||||||    
T  12776306 gagtcaaaagtagaaatattgtattgtaatcaatgcatttgaattta 12776260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 34504188 - 34504242
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaattta 185  Q
    |||||||||| |||||||||||||||| || ||| ||| |||| |||||||||||    
T  34504188 aagttaatgaatcaaaagtagaaataagttgttgcaatcaatgcatttgaattta 34504242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 378
Target Start/End: Complemental strand, 25803343 - 25803238
Alignment:
Q  275 gtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttat 372  Q
    ||||||||||| ||| || |||||||| || |||||||| ||||| ||   ||||| |||||||||  | ||||||||||||||||||||   |||||||    
T  25803343 gtctttagaaattaggtctaacataaggttctaggtttaaggttttggaaagtgaaggatttgtcattatgatgaaccaataatcccaagctctttttat 25803244  T
Q  373 tattat 378  Q
    ||||||    
T  25803243 tattat 25803238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 376
Target Start/End: Original strand, 29952101 - 29952211
Alignment:
Q  265 agagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtc 364  Q
    ||||||| |||||||||||||  | ||  |||||||||||||  | |||| ||||| |||||| ||||||||||  | ||||||||||||||||| || |    
T  29952101 agagaaaattgtctttagaaacaa-atttaacataagatttaaatatagg-tttggattgtgagtgatttgtcattatgatgaaccaataatcccgagac 29952198  T
Q  365 g-tttttattatt 376  Q
    | |||||||||||    
T  29952199 gctttttattatt 29952211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0855 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 204 - 385
Target Start/End: Original strand, 3936 - 4119
Alignment:
Q  204 aataagtgtgggttctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagat 303  Q
    |||||| |||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||    
T  3936 aataagcgtggttgctattgaaatacattcattgagaccgaaaggagatatgaaaagccaaagagaaacttgtctttagaaaataggtctaacgtaagat 4035  T
Q  304 t-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcg-tttttattattattattttc 385  Q
    | |||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||  || ||||||||||||||||||||    
T  4036 tctaggtttagggtttgggttgtgaaagatttatcaccaaaatgaaccaataatcccaatgcgctttttattattattattttc 4119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0847 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 204 - 385
Target Start/End: Original strand, 4101 - 4284
Alignment:
Q  204 aataagtgtgggttctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagat 303  Q
    |||||| |||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||||    
T  4101 aataagcgtggttgctattgaaatacattcattgagaccgaaaggagatatgaaaagccaaagagaaacttgtctttagaaaataggtctaacgtaagat 4200  T
Q  304 t-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcg-tttttattattattattttc 385  Q
    | |||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||||  || ||||||||||||||||||||    
T  4201 tctaggtttagggtttgggttgtgaaagatttatcaccaaaatgaaccaataatcccaatgcgctttttattattattattttc 4284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 59)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 227 - 376
Target Start/End: Original strand, 20225573 - 20225722
Alignment:
Q  227 tacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtg 326  Q
    |||||||| ||||||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20225573 tacattcactgagaccgagagaagatgtgaaaagccaaagagaaacttgtctttagaaaatagatccaacataagatttaggtttagagtttggtttgtg 20225672  T
Q  327 aatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattatt 376  Q
    |  ||||||||| |||||||||||||||||||||||  ||||||||||||    
T  20225673 atggatttgtcatcaagatgaaccaataatcccaagatgtttttattatt 20225722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 227 - 376
Target Start/End: Original strand, 22119557 - 22119706
Alignment:
Q  227 tacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtg 326  Q
    |||||||| ||||||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22119557 tacattcactgagaccgagagaagatgtgaaaagccaaagagaaacttgtctttagaaaatagatccaacataagatttaggtttagagtttggtttgtg 22119656  T
Q  327 aatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattatt 376  Q
    |  ||||||||| |||||||||||||||||||||||  ||||||||||||    
T  22119657 atggatttgtcatcaagatgaaccaataatcccaagatgtttttattatt 22119706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 204 - 377
Target Start/End: Complemental strand, 31965133 - 31964962
Alignment:
Q  204 aataagtgtgggttctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagat 303  Q
    |||| |||||| | |||||||| ||||||||||||||| ||||||||||||||||  ||||||||||| ||||||||||||||||| |||||| |||||     
T  31965133 aataggtgtggttcctattgaaatacattcattgagactgaaaggagatatgaaat-ccaaagagaaacttgtctttagaaaataggtccaacttaagac 31965035  T
Q  304 ttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattatta 377  Q
    | |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31965034 t-aggtttagagtttggtttgtgaaagatttgtcaccaagatgaaccaataatcccaaggcgtttttattatta 31964962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 222 - 408
Target Start/End: Complemental strand, 24392494 - 24392305
Alignment:
Q  222 tgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttgg 320  Q
    |||| |||| ||| ||||||||||||||||| ||| | |||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||    
T  24392494 tgaaatacactcactgagaccgaaaggagatgtgataggccaaagagaaacttgtctttagaaaataggtccaacataaggttctaggtttagggtttgg 24392395  T
Q  321 tttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattatta---ttattttctatcaaacaaaaatccaactttt 408  Q
    |||||||| |||||||||||| || |||| | |||||| ||| |  |||||||||||   ||||||||| | |||| ||||||||||||||    
T  24392394 tttgtgaaggatttgtcaccatgacgaactagtaatcctaaggctcttttattattattgttattttcttttaaac-aaaatccaactttt 24392305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 232 - 378
Target Start/End: Original strand, 20464871 - 20465017
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatg 330  Q
    ||||||||||||||||||||| ||| | || ||||||||| ||||||||||||||||| | ||||||||| || |||||| ||||||||||||||||| |    
T  20464871 tcattgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggttcaacataaggttctaggtt-agggtttggtttgtgaagg 20464969  T
Q  331 atttgtcaccaagatgaaccaataatcccaagtcgtttttattattat 378  Q
    ||||||||||||||||||||||||||| |||| || |||| |||||||    
T  20464970 atttgtcaccaagatgaaccaataatcacaaggcgctttttttattat 20465017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 238 - 379
Target Start/End: Original strand, 19695913 - 19696056
Alignment:
Q  238 agaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgt 336  Q
    ||||||||||||||| ||| | || ||||| ||| ||||||||||||||||| ||||||||||  || ||||||||||||||| |||||||| |||||||    
T  19695913 agaccgaaaggagatgtgataggctaaagaaaaacttgtctttagaaaataggtccaacataaagttctaggtttagggtttgatttgtgaaggatttgt 19696012  T
Q  337 caccaagatgaaccaataatcccaagtcg-tttttattattatt 379  Q
    ||||| || ||||||||||||||||| || ||||||||||||||    
T  19696013 caccatgacgaaccaataatcccaagacgctttttattattatt 19696056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 240 - 377
Target Start/End: Original strand, 26822361 - 26822500
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataa-gatttaggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | || ||||||||| ||||||||||||||||| |||||||||| | |||||||||| ||||||||||||||| | |||||||    
T  26822361 accgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaagttttaggtttaaggtttggtttgtgaagggtttgtca 26822460  T
Q  339 ccaagatgaaccaataatcccaagtcg-tttttattatta 377  Q
    ||| || ||||||||||||||||| || ||||||||||||    
T  26822461 ccatgacgaaccaataatcccaaggcgctttttattatta 26822500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 227 - 379
Target Start/End: Complemental strand, 15470760 - 15470607
Alignment:
Q  227 tacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgt 325  Q
    |||||||| |||||  |||||||||| | | | || ||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||    
T  15470760 tacattcactgagattgaaaggagatgtaataggctaaagagaaacttgtctttagaaaatagctccaacataaggttctaggtttagggtttggtttgt 15470661  T
Q  326 gaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattatt 379  Q
    |||  ||||||||||| ||||||||||||||| |||    ||||||||||||||    
T  15470660 gaagaatttgtcaccatgatgaaccaataatcgcaaacactttttattattatt 15470607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 243 - 376
Target Start/End: Complemental strand, 17793556 - 17793421
Alignment:
Q  243 gaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcacca 341  Q
    |||||||||| ||| | || ||||||||| ||||||||||||||||| |||||||||| ||| ||| |||| ||||||||||||||| ||||||||||||    
T  17793556 gaaaggagatgtgataggctaaagagaaaattgtctttagaaaataggtccaacataaaattctagatttatggtttggtttgtgaaggatttgtcacca 17793457  T
Q  342 agatgaaccaataatcccaagtcg-tttttattatt 376  Q
     || ||||||||||||||||| || |||||||||||    
T  17793456 tgacgaaccaataatcccaaggcgctttttattatt 17793421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 379
Target Start/End: Original strand, 18974159 - 18974301
Alignment:
Q  238 agaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgt 336  Q
    ||||||||||||||| ||| | |||||||||||| || |||||||||| ||| |||||||| || || |||||||||||||| ||||||||| |||||||    
T  18974159 agaccgaaaggagatgtgataggccaaagagaaacttttctttagaaagtaggtccaacatcaggttctaggtttagggtttagtttgtgaaggatttgt 18974258  T
Q  337 caccaagatgaaccaataatcccaagtcgtttttattattatt 379  Q
    ||||| || ||||||||||||||| | |  |||||||||||||    
T  18974259 caccatgacgaaccaataatcccatggctcttttattattatt 18974301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 240 - 376
Target Start/End: Complemental strand, 23346761 - 23346623
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| | | | || ||||||||| ||||||||||||||||| ||||||||||  || |||||||||||||||||||||||| |||||||||    
T  23346761 accgaaaggagatgttataggctaaagagaaacttgtctttagaaaataggtccaacataaagttataggtttagggtttggtttgtgaaggatttgtca 23346662  T
Q  339 ccaagatgaaccaataatcccaagtcg-tttttattatt 376  Q
    ||| || |||||| |||||||||| || |||||||||||    
T  23346661 ccatgacgaaccagtaatcccaaggcgctttttattatt 23346623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 228 - 403
Target Start/End: Complemental strand, 12660039 - 12659863
Alignment:
Q  228 acattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtg 326  Q
    ||||||| ||| ||||||||||||| ||| | || ||||||||| ||||||||||||||||| |||||||| ||| | || ||||| |||||||||||||    
T  12660039 acattcactgaaaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaagttctaagttta-ggtttggtttgtg 12659941  T
Q  327 aatgatttgtcaccaagatgaaccaataatcccaagtc-gtttttattattattattttctatcaaacaaaaatccaa 403  Q
    || |||||||||||| || ||||||||||||| ||| |  ||||||||||| ||||||| | ||||  ||||||||||    
T  12659940 aaggatttgtcaccatgacgaaccaataatcctaagacactttttattattgttattttatttcaattaaaaatccaa 12659863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 376
Target Start/End: Original strand, 20221678 - 20221823
Alignment:
Q  227 tacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtg 326  Q
    |||||||| ||| ||| | ||||||| |||||||||||||||    ||||||||  |||||||||| ||| ||| |||||| |||| |||||| |||||     
T  20221678 tacattcagtgataccaagaggagatgtgaaaagccaaagag----ttgtctttgtaaaatagatcaaacgtaaaatttagttttaaggtttgctttgta 20221773  T
Q  327 aatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattatt 376  Q
    || ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  20221774 aaggatttgtcaccaagatgaatcaataatcccaaggcgtttttattatt 20221823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 376
Target Start/End: Original strand, 22115662 - 22115807
Alignment:
Q  227 tacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtg 326  Q
    |||||||| ||| ||| | ||||||| |||||||||||||||    ||||||||  |||||||||| ||| ||| |||||| |||| |||||| |||||     
T  22115662 tacattcagtgataccaagaggagatgtgaaaagccaaagag----ttgtctttgtaaaatagatcaaacgtaaaatttagttttaaggtttgctttgta 22115757  T
Q  327 aatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattatt 376  Q
    || ||||||||||||||||||| ||||||||||||| |||||||||||||    
T  22115758 aaggatttgtcaccaagatgaatcaataatcccaaggcgtttttattatt 22115807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 264 - 370
Target Start/End: Original strand, 18627961 - 18628068
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||||||||||| ||||||||| ||||  || |||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||    
T  18627961 aagagaaacttgtctttagaaagtagatccaatataaagttctaggtttagggtttggtttgtgaagggtttgtcatcaagatgaaccaataatcccaag 18628060  T
Q  363 tcgttttt 370  Q
     |||||||    
T  18628061 gcgttttt 18628068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 263 - 379
Target Start/End: Original strand, 15172751 - 15172869
Alignment:
Q  263 aaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    ||||||||| || | |||||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||||| || ||||||||||||||||    
T  15172751 aaagagaaacttatgtttagaaaatagctccaacataaggttctaggtttagggtttggtttgtgaaggatttgtcaccatgacgaaccaataatcccaa 15172850  T
Q  362 gtcg-tttttattattatt 379  Q
      || ||||||||||||||    
T  15172851 agcgctttttattattatt 15172869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 14893938 - 14894077
Alignment:
Q  243 gaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcacca 341  Q
    |||||||||| ||| | ||  |||||||| ||||||||||||| ||| |||||| |||  || ||||||||||||||||| |||||| ||||||||||||    
T  14893938 gaaaggagatttgataggcttaagagaaacttgtctttagaaagtaggtccaacttaaatttctaggtttagggtttggtatgtgaaggatttgtcacca 14894037  T
Q  342 agatgaaccaataatcccaagtcgtttttattattattatt 382  Q
     |||||||||||||||||||| ||  |||||||||||||||    
T  14894038 tgatgaaccaataatcccaaggcg-ctttattattattatt 14894077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 243 - 376
Target Start/End: Complemental strand, 19612314 - 19612179
Alignment:
Q  243 gaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcacca 341  Q
    |||||||||| ||| | ||  |||||||| ||||||||||||| ||| ||||| ||||  || |||||||||||||||||||||||| | ||||||| ||    
T  19612314 gaaaggagatgtgataggcttaagagaaacttgtctttagaaagtaggtccaatataaagttctaggtttagggtttggtttgtgaaggttttgtcatca 19612215  T
Q  342 agatgaaccaataatcccaagtcg-tttttattatt 376  Q
    ||||||||||||||||||||| || |||||||||||    
T  19612214 agatgaaccaataatcccaaggcgctttttattatt 19612179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 25922941 - 25922843
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| || |||||||||| ||| ||||| ||||  ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||    
T  25922941 aagagaaacttatctttagaaagtaggtccaatataaagtttaggtttagggtttggtttatgaaggatttgtcaccaagatgaaccaataatctcaag 25922843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 264 - 376
Target Start/End: Original strand, 19994127 - 19994240
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| |||||||||| || ||| ||||| ||||  ||||||||||||||||| |||||||| | |||||||||||||||||| ||||||||||||     
T  19994127 aagagaaacttgtctttaggaagtaggtccaatataaagtttaggtttagggtttgttttgtgaagggtttgtcaccaagatgaactaataatcccaagg 19994226  T
Q  364 cg-tttttattatt 376  Q
    || |||||||||||    
T  19994227 cgctttttattatt 19994240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 382
Target Start/End: Original strand, 26018488 - 26018604
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| ||||| ||||  |||||||||||||||| ||||||||| || ||||||| | || |||||||||||||||||     
T  26018488 aagagaaacttgtctttagaaagtaggtccaatataaagtttaggtttagggttt-gtttgtgaaggaattgtcactatgacgaaccaataatcccaagg 26018586  T
Q  364 cgtttttattattattatt 382  Q
    || ||||||| ||||||||    
T  26018587 cgcttttatt-ttattatt 26018604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 414
Target Start/End: Original strand, 26139192 - 26139350
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| ||||| ||||  |||||||||||||||| ||||||||| || ||||||| | || |||||||||||||||||     
T  26139192 aagagaaacttgtctttagaaagtaggtccaatataaagtttaggtttagggttt-gtttgtgaaggaattgtcactatgacgaaccaataatcccaagg 26139290  T
Q  364 cg-----tttttattattattattttct----atcaaacaaaaatccaactttttacctt 414  Q
    ||      ||||||||||||||||||||    || |||||||||| ||||||| ||||||    
T  26139291 cgctattattttattattattattttcttttaattaaacaaaaatacaactttctacctt 26139350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 5399727 - 5399855
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag-ggtttggtttgtgaatgatt 333  Q
    |||||| |||||||||| ||| | || ||||||||| ||||||||| ||| ||| || |||||||  || ||||||||  |||||||||| |||| ||||    
T  5399727 tgagactgaaaggagatgtgataggctaaagagaaacttgtctttaaaaagtaggtctaacataaagttctaggtttaaaggtttggtttctgaaggatt 5399826  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||||||||||||||||||    
T  5399827 tgtcaccatgatgaaccaataatcccaag 5399855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 361
Target Start/End: Complemental strand, 22600941 - 22600814
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| || |||||||||| ||| || |||||||  || |||||||| ||||| |||||||||||| ||    
T  22600941 tgagaccgaaaggagatgtgataggctaaagagaaacttttctttagaaagtaggtctaacataaagttctaggtttaaggttttggtttgtgaatggtt 22600842  T
Q  334 tgtcaccaagatgaaccaataatcccaa 361  Q
    |||||  | |||||||||||||||||||    
T  22600841 tgtcattatgatgaaccaataatcccaa 22600814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 23523502 - 23523403
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| |||||||| |||| ||| ||||| ||||  || |||||||||||||||||||||||| | ||||||| ||||||| |||||||||||||||    
T  23523502 aagagaaacttgtcttttgaaagtaggtccaatataaagttctaggtttagggtttggtttgtgaagggtttgtcatcaagatgcaccaataatcccaag 23523403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 28733696 - 28733597
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| |||| |||||||| ||  |||| |||||  || |||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||    
T  28733696 aagagaaacttgtttttagaaagtaagtccatcataaagttataggtttagggtttggtttgtgaagggtttttcaccaagatgaaccaataatcccaag 28733597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 20435748 - 20435888
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcac 339  Q
    ||||||||||||| ||| | ||  |||||||| ||||||||||||| || |||||| |||| |||  |||||||||||| ||||||||| || |||| |     
T  20435748 accgaaaggagatgtgataggcttaagagaaacttgtctttagaaagtaaatccaatataaaattctggtttagggttt-gtttgtgaaggacttgttat 20435846  T
Q  340 caagatgaaccaataatcccaagtcgtttttattattattatt 382  Q
      ||||||||||||||||||||| |||||| ||| ||||||||    
T  20435847 ttagatgaaccaataatcccaagccgttttaatt-ttattatt 20435888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 25338792 - 25338675
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| | | ||||| ||||  ||||||||||||||||||  |||||| | |||||||  |||||||| |||||||||||||     
T  25338792 aagagaaacttgtctttagaaagtgggtccaatataaagtttaggtttagggtttgggatgtgaagggtttgtcattaagatgaatcaataatcccaagg 25338693  T
Q  364 cg--tttttattattatt 379  Q
    ||  ||||||||||||||    
T  25338692 cgcctttttattattatt 25338675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 382
Target Start/End: Original strand, 25508119 - 25508235
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| ||||| ||||  || ||||||||||||| ||||||||| || ||||||| | || |||||||||||||||||     
T  25508119 aagagaaacttgtctttagaaagtaggtccaatataaagttaaggtttagggttt-gtttgtgaaggaattgtcactatgaggaaccaataatcccaaga 25508217  T
Q  364 cgtttttattattattatt 382  Q
    || ||||||| ||||||||    
T  25508218 cgcttttatt-ttattatt 25508235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 26157861 - 26157958
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||||||||||| ||| ||||| ||||  |||||||||||||||| ||||||||| || ||||||| | || |||||||||||||||||    
T  26157861 aagagaaacttgtctttagaaagtaggtccaatataaagtttaggtttagggttt-gtttgtgaaggaattgtcactatgacgaaccaataatcccaag 26157958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 391
Target Start/End: Complemental strand, 28080058 - 28079929
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||||||||||||||||| ||| ||||||||||| || ||||||| ||| ||||||||||||| ||||||||   | |||||||||||||||| ||    
T  28080058 aagagaaatttgtctttagaaattaggtccaacataaggttctaggtttaaggttttggtttgtgaaggatttgtcgttatgatgaaccaataatccgaa 28079959  T
Q  362 gtc-gtttttattattattattttctatcaa 391  Q
    | |  |||||||||||| |||||||| ||||    
T  28079958 ggctctttttattatta-tattttctttcaa 28079929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 379
Target Start/End: Complemental strand, 23509978 - 23509837
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | ||  |||||||| ||||||||||||| ||| ||||| ||||  || |||||||||||||||| || |||| | ||||| |    
T  23509978 accgaaaggagatgtgagaggcttaagagaaacttgtctttagaaagtaggtccaatataaagttctaggtttagggtttggattttgaagggtttgtaa 23509879  T
Q  339 ccaagatgaaccaataatcccaagtc-gtttttattattatt 379  Q
     ||||||||| ||||||||||||| |  ||||||||||||||    
T  23509878 tcaagatgaaacaataatcccaaggcactttttattattatt 23509837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 18993662 - 18993782
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | ||  |||||||| ||||| ||||||| | | || || ||||  || ||| |||||||||||||||||||| |||||    
T  18993662 tgagaccgaaaggagatgtgataggcttaagagaaacttgtccttagaaagtgggtctaatataaagttctagatttagggtttggtttgtgaaggattt 18993761  T
Q  335 gtcaccaagatgaaccaataa 355  Q
    |||| ||||||||||||||||    
T  18993762 gtcaacaagatgaaccaataa 18993782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 25030693 - 25030578
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||||||||||| ||  |||||| |||  || |||||||||||||||||||||||| | |||||||| |||||  ||||||||||| |||    
T  25030693 aagagaaacttgtctttagaaagtaagtccaacgtaaagttctaggtttagggtttggtttgtgaagggtttgtcactaagatagaccaataatccaaag 25030594  T
Q  363 tcg-tttttattatta 377  Q
     || ||||||||||||    
T  25030593 gcgctttttattatta 25030578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 236 - 361
Target Start/End: Original strand, 26474451 - 26474578
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataaga-tttaggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||||| ||||||| ||| || ||||| ||| ||||||||| | ||||||||||||||| ||||    
T  26474451 tgagaccgaaaggagatgtgataggctaaagagaaacttgtccttagaaattaggtctaacatgagattttaggtttaatggtttggtttgtgaaagatt 26474550  T
Q  334 tgtcaccaagatgaaccaataatcccaa 361  Q
    |||| ||  || | ||||||||||||||    
T  26474551 tgtctccttgacggaccaataatcccaa 26474578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 384
Target Start/End: Original strand, 29094045 - 29094194
Alignment:
Q  238 agaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttg-gtttgtgaatgatttg 335  Q
    ||||||||||||||| ||| | || ||||||||| |||||||||||||  || || ||||| ||| |||||||||| ||||||  |||| ||| | ||||    
T  29094045 agaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaagaaggtctaacataaagttttaggtttaaggtttgattttgagaagggtttg 29094144  T
Q  336 tcaccaagatgaaccaataatcccaagtcg-tttttattattattatttt 384  Q
    |||||| || | |||||||||||| || || ||||||||||| |||||||    
T  29094145 tcaccatgacggaccaataatcccgagacgctttttattattgttatttt 29094194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 244 - 379
Target Start/End: Original strand, 3924147 - 3924280
Alignment:
Q  244 aaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaa 342  Q
    ||||||||| ||| | || ||||||||| ||||||||| ||    | |||||||||| ||| || ||||||||||||||||||||| ||||||||||||     
T  3924147 aaaggagatgtgataggctaaagagaaacttgtctttaaaa----ggtccaacataaaattctaagtttagggtttggtttgtgaaggatttgtcaccat 3924242  T
Q  343 gatgaaccaataatcccaagtcg-tttttattattatt 379  Q
    ||  ||||||||||  |||| || ||||||||||||||    
T  3924243 gaaaaaccaataatttcaaggcgctttttattattatt 3924280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 8604001 - 8604129
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag-ggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||| ||| ||| || |||||||  || || |||||  ||||||||||||||| | ||    
T  8604001 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttacaaattaggtctaacataaagttataagtttaaaggtttggtttgtgaagggtt 8604100  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| |||| | |||||||||||||    
T  8604101 tgtcaccatgatggatcaataatcccaag 8604129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 328
Target Start/End: Complemental strand, 13216941 - 13216848
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaa 328  Q
    ||||||| ||||||||| ||| | |  ||||||||| ||||||||||||||||| || ||||| ||| | |||||||||||||||| |||||||    
T  13216941 tgagaccaaaaggagatgtgataggataaagagaaaattgtctttagaaaataggtctaacataaagttctaggtttagggtttggcttgtgaa 13216848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 338
Target Start/End: Original strand, 6795437 - 6795545
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtgaat 329  Q
    ||||||||||||||||||||| ||| |  | ||||||||| |||| |||||||||||| |  ||||| ||| | ||||||| | |||||||||||||||     
T  6795437 tcattgagaccgaaaggagatgtgatagactaaagagaaacttgtatttagaaaataggtataacataaagttctaggtttaaaggtttggtttgtgaag 6795536  T
Q  330 gatttgtca 338  Q
    |||||||||    
T  6795537 gatttgtca 6795545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 101 - 185
Target Start/End: Complemental strand, 7509818 - 7509734
Alignment:
Q  101 gggaaatgctaacttgtgtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaattta 185  Q
    ||||||||||||||| || |  ||| | | |||||||||||||||||||||||||| | | ||||||| |||| |||||||||||    
T  7509818 gggaaatgctaacttttgcccttaaggcacaagttaatgagtcaaaagtagaaatattgtgttgtaatcaatgcatttgaattta 7509734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 362
Target Start/End: Original strand, 18449272 - 18449404
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaat 329  Q
    ||||||||||||| ||||||| ||| | ||  |||||||| | ||||||||||| ||| || || ||||| ||| |||||||  ||||| | ||||||||    
T  18449272 tcattgagaccgataggagatgtgataggcttaagagaaactcgtctttagaaactaggtctaaaataaggttttaggtttaatggttttgcttgtgaat 18449371  T
Q  330 gatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||||   ||||| |||||||||||||||    
T  18449372 gatttgtcaattagatgtaccaataatcccaag 18449404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 362
Target Start/End: Complemental strand, 19614782 - 19614654
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||| ||| ||| | || ||||||||||||||| |||||||  || || ||||| | | ||||||||| | |||||||||| |||| ||||    
T  19614782 tgagaccgaaaggggatgtgataggctaaagagaaatttgtccttagaaatgaggtctaacatgaggttttaggtttaatggtttggtttatgaaagatt 19614683  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||| ||| |||| ||||||||| |||||    
T  19614682 tgtcgccatgatggaccaataattccaag 19614654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 376
Target Start/End: Original strand, 29254513 - 29254624
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| ||||| ||||  |||||||| ||||||| ||||  ||| | |||||||  |||||||||||||||||| |||     
T  29254513 aagagaaacttgtctttagaaagtaggtccaatataaagtttaggttgagggttt-gtttaagaagggtttgtcattaagatgaaccaataatcctaagg 29254611  T
Q  364 cgtttttattatt 376  Q
    |  ||||||||||    
T  29254612 ctcttttattatt 29254624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 379
Target Start/End: Original strand, 32545152 - 32545218
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcg--tttttattattatt 379  Q
    |||||||||||||| |||||||||  | |||||||||||||||||||| ||  ||||||||||||||    
T  32545152 gtttggtttgtgaaggatttgtcattatgatgaaccaataatcccaaggcgcctttttattattatt 32545218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 20218036 - 20217939
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||| ||||||| ||| || || ||||  |||||||||||||||| ||||||||| | ||||| |  | ||||||||||||||||||||    
T  20218036 aagagaaacttgtcattagaaagtaggtcaaatataaagtttaggtttagggttt-gtttgtgaagggtttgttattatgatgaaccaataatcccaag 20217939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 22112061 - 22111964
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||| ||||||| ||| || || ||||  |||||||||||||||| ||||||||| | ||||| |  | ||||||||||||||||||||    
T  22112061 aagagaaacttgtcattagaaagtaggtcaaatataaagtttaggtttagggttt-gtttgtgaagggtttgttattatgatgaaccaataatcccaag 22111964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 24545182 - 24545067
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| | ||||||||||| ||| ||||| ||||  ||||||||||| |||| ||||||||| |  ||||||  ||||||||||||| ||| ||||     
T  24545182 aagagaaactcgtctttagaaagtaggtccaatataaagtttaggtttagagttt-gtttgtgaaggggttgtcattaagatgaaccaatgatcacaaga 24545084  T
Q  364 c-gtttttattattatt 379  Q
    |  ||||||||||||||    
T  24545083 ctctttttattattatt 24545067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 362
Target Start/End: Original strand, 25949818 - 25949950
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaat 329  Q
    |||||||||| |||||||  | ||| | || ||||||||| ||||||||||||| ||| || |||||||| || ||||||| ||||||||| ||| |||     
T  25949818 tcattgagactgaaaggaactgtgataggctaaagagaaacttgtctttagaaattaggtctaacataaggttctaggtttaagggtttggattgagaag 25949917  T
Q  330 gatttgtcaccaagatgaaccaataatcccaag 362  Q
    | ||||||||   || | |||||||||||||||    
T  25949918 ggtttgtcactttgacggaccaataatcccaag 25949950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 377
Target Start/End: Complemental strand, 32796112 - 32796010
Alignment:
Q  275 gtctttagaaaatagatccaacataagatttaggt-ttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcg-tttttat 372  Q
    ||||||||||| |||||  |||||||||||||||| |||||||| || ||||||| |||||||||  | || |||||||||||||| || || |||||||    
T  32796112 gtctttagaaa-tagatttaacataagatttaggtattagggtt-ggattgtgaaagatttgtcattatgacgaaccaataatcccgagacgctttttat 32796015  T
Q  373 tatta 377  Q
    |||||    
T  32796014 tatta 32796010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 18183889 - 18183842
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    ||||||||||||||||| ||||||   |||||||||||||||||||||    
T  18183889 gtttggtttgtgaatgacttgtcaattagatgaaccaataatcccaag 18183842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 382
Target Start/End: Complemental strand, 19569677 - 19569610
Alignment:
Q  316 tttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtc-gtttttattattattatt 382  Q
    ||||||||||||| |||||||||  | |||||||||||||||||||| |   ||||||||||||||||    
T  19569677 tttggtttgtgaaggatttgtcattaggatgaaccaataatcccaaggctccttttattattattatt 19569610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 35243865 - 35243818
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||||||||| || |||||||  |||||||||||||||||||||    
T  35243865 gtttggtttgtgaaggacttgtcacttagatgaaccaataatcccaag 35243818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 360
Target Start/End: Original strand, 25964416 - 25964542
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||| ||||||||| ||  || |||||||| || ||||||| ||||||||| ||| ||| | ||    
T  25964416 tgagaccgaaaggagatgtgataggctaaagagaaacttgcctttagaaattaagtctaacataaggttataggtttaagggtttggattgagaagggtt 25964515  T
Q  334 tgtcaccaagatgaaccaataatccca 360  Q
    ||||||   || | |||||||||||||    
T  25964516 tgtcactttgacggaccaataatccca 25964542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 360
Target Start/End: Original strand, 25969063 - 25969189
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||| ||||||||| ||  || |||||||| || ||||||| ||||||||| ||| ||| | ||    
T  25969063 tgagaccgaaaggagatgtgataggctaaagagaaacttgcctttagaaattaagtctaacataaggttataggtttaagggtttggattgagaagggtt 25969162  T
Q  334 tgtcaccaagatgaaccaataatccca 360  Q
    ||||||   || | |||||||||||||    
T  25969163 tgtcactttgacggaccaataatccca 25969189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 313
Target Start/End: Original strand, 20439456 - 20439529
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttag 313  Q
    ||||||||||||| ||| | ||  |||||||| ||||||||||||| || |||||| ||||||||  |||||||    
T  20439456 accgaaaggagatgtgataggcttaagagaaacttgtctttagaaagtaaatccaatataagattctggtttag 20439529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 28720881 - 28720816
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaa 328  Q
    |||||||| ||||||||||||| ||| |||| ||| ||| | |||||||||||||| |||||||||    
T  28720881 aagagaaacttgtctttagaaagtaggtccatcataaagttataggtttagggtttagtttgtgaa 28720816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 342
Target Start/End: Original strand, 1626668 - 1626748
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatttgtcaccaa 342  Q
    |||||||| | ||||||||||| ||| || || ||||| ||| |||||||  ||||||| |||||||||||||||||||||    
T  1626668 aagagaaactcgtctttagaaactaggtctaaaataaggttttaggtttaatggtttggcttgtgaatgatttgtcaccaa 1626748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 22738386 - 22738486
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagg-gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| ||||||||||||  ||| || |||||||| || ||||||||   |||||||||| ||| || |||||   |||||||||||||||||||||    
T  22738386 aagagaaacttgtctttagaagttaggtctaacataaggttctaggtttaatagtttggtttgagaaggacttgtcgttaagatgaaccaataatcccaa 22738485  T
Q  362 g 362  Q
    |    
T  22738486 g 22738486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 6e-41; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 227 - 379
Target Start/End: Original strand, 26194721 - 26194874
Alignment:
Q  227 tacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgt 325  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||| ||||||||| ||||||| ||||||||||| || ||||||||||||||||||| |    
T  26194721 tacattcactgagaccgagaggagatgtgaaaagccaaagagaaacttgtctttataaaataggtccaacataaggttctaggtttagggtttggtttct 26194820  T
Q  326 gaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattatt 379  Q
    ||| ||||||||||||||||||| |||||| | |||  || |||||||||||||    
T  26194821 gaaggatttgtcaccaagatgaatcaataacctcaatgcgcttttattattatt 26194874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 227 - 370
Target Start/End: Complemental strand, 30818792 - 30818648
Alignment:
Q  227 tacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgt 325  Q
    |||| ||| ||||||||||||||||| |||   |  ||||||||| ||||||||||||||||| | ||||||||  || |||||||||||||||||||||    
T  30818792 tacactcactgagaccgaaaggagatgtgatgggttaaagagaaaattgtctttagaaaataggttcaacataaagttctaggtttagggtttggtttgt 30818693  T
Q  326 gaatgatttgtcaccaagatgaaccaataatcccaagtcgttttt 370  Q
    |||||||||||||||| |||||||||||||||||||| |||||||    
T  30818692 gaatgatttgtcaccatgatgaaccaataatcccaagacgttttt 30818648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 236 - 384
Target Start/End: Complemental strand, 25404668 - 25404519
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| |||   || ||||||||| |||| |||||||||||| ||||||||||  || |||||||||||||||||||||||| |||||    
T  25404668 tgagaccgaaaggagatgtgattggctaaagagaaacttgtatttagaaaataggtccaacataaagttctaggtttagggtttggtttgtgaaggattt 25404569  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattattatttt 384  Q
    || |||| || ||||||||||||||||| || |||||| |||||||||||    
T  25404568 gtaaccatgacgaaccaataatcccaaggcgcttttataattattatttt 25404519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 382
Target Start/End: Complemental strand, 20898240 - 20898092
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||||||  |||| |||||| || |||||||||||||||||||| |||||||||    
T  20898240 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaaatacgtccaccataaggttctaggtttagggtttggtttgggaatgattt 20898141  T
Q  335 gtcaccaagatgaaccaataatcccaagtcg-tttttattattattatt 382  Q
    ||||||| || ||||||||||| ||||| || || ||||||||||||||    
T  20898140 gtcaccatgacgaaccaataattccaaggcgcttattattattattatt 20898092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 236 - 416
Target Start/End: Complemental strand, 16384541 - 16384363
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    |||||||||||||| || ||| | || ||||||||| ||||||||||||| ||| ||||||||||| || ||| ||||| |||||||||||||| |||||    
T  16384541 tgagaccgaaaggaaatgtgataggctaaagagaaacttgtctttagaaa-taggtccaacataaggttctagatttagagtttggtttgtgaaggattt 16384443  T
Q  335 gtcaccaagatgaaccaataatcccaagtcgtttttattattattattttctatcaaacaaaaatccaactttttacctttg 416  Q
    ||  ||| || ||||||||||||||||| || ||||||||||||||||||||   |||||||||| |||||||||| |||||    
T  16384442 gttgccatgacgaaccaataatcccaaggcgcttttattattattattttct-caaaacaaaaat-caactttttaactttg 16384363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 232 - 379
Target Start/End: Original strand, 20498053 - 20498202
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatg 330  Q
    ||||||||| ||||||||||| ||| | || ||| ||||| | ||||||||||||||| ||||||||||  || |||||||||||||||||||||||| |    
T  20498053 tcattgagatcgaaaggagatgtgataggctaaaaagaaactcgtctttagaaaataggtccaacataaagttctaggtttagggtttggtttgtgaagg 20498152  T
Q  331 atttgtcaccaagatgaaccaataatcccaa-gtcgtttttattattatt 379  Q
    ||||||||||| || |||||||||||||||| ||  ||||||||||||||    
T  20498153 atttgtcaccatgaagaaccaataatcccaaggtgctttttattattatt 20498202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 240 - 358
Target Start/End: Original strand, 23299393 - 23299512
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | || ||||||||| |||||| |||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||||    
T  23299393 accgaaaggagatgtgataggctaaagagaaacttgtctctagaaaataggtccaacataaggttctaggtttagggtttggtttgtgaaggatttgtca 23299492  T
Q  339 ccaagatgaaccaataatcc 358  Q
    ||| || |||||||||||||    
T  23299493 ccatgacgaaccaataatcc 23299512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 49044587 - 49044758
Alignment:
Q  20 aaaaaggatgaaaataaaaagtgaatcctatgttaccattgg----tgctttgaattt-aaaattaaatga-tttgtatttctttttgggaaatgctaac 113  Q
    ||||| || |||||||||||||||||||||||||||||||||    |||||||| ||| |||||||||||| ||| |||| |||||||||||||||||||    
T  49044587 aaaaaagaagaaaataaaaagtgaatcctatgttaccattggttgctgctttgattttaaaaattaaatgattttttattcctttttgggaaatgctaac 49044686  T
Q  114 ttgt--gtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatt 183  Q
    || |   |  ||||   | |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  49044687 ttataactatataagacataagttaatgagtcaaaagtagaaatattttattgtaattaatgcatttgaatt 49044758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 379
Target Start/End: Original strand, 20448904 - 20449053
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatg 330  Q
    ||||||||| | ||||||||| ||| | || ||| ||||| | ||||||||||||||| ||||||||||  || || ||||||||||||||||||||| |    
T  20448904 tcattgagatcaaaaggagatgtgataggctaaaaagaaactcgtctttagaaaataggtccaacataaagttctacgtttagggtttggtttgtgaagg 20449003  T
Q  331 atttgtcaccaagatgaaccaataatcccaagtcg-tttttattattatt 379  Q
    ||||||||||| || ||||||||||| ||||| || ||||||||||||||    
T  20449004 atttgtcaccatgacgaaccaataataccaaggcgctttttattattatt 20449053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 232 - 379
Target Start/End: Original strand, 20534670 - 20534819
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatg 330  Q
    ||||||||| | ||||||||| ||| | || ||| ||||| | ||||||||||||||| ||||||||||  || || ||||||||||||||||||||| |    
T  20534670 tcattgagatcaaaaggagatgtgataggctaaaaagaaactcgtctttagaaaataggtccaacataaagttctacgtttagggtttggtttgtgaagg 20534769  T
Q  331 atttgtcaccaagatgaaccaataatcccaagtcg-tttttattattatt 379  Q
    ||||||||||| || ||||||||||| ||||| || ||||||||||||||    
T  20534770 atttgtcaccatgacgaaccaataataccaaggcgctttttattattatt 20534819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 240 - 403
Target Start/End: Original strand, 21240572 - 21240740
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataa-gatttaggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | ||  |||||||| ||||||||||||| | | |||||||||| | |||||||||||| |||||||||||||   |||||||    
T  21240572 accgaaaggagatgtgataggcttaagagaaacttgtctttagaaagtgggtccaacataaagttttaggtttaggatttggtttgtgaagagtttgtca 21240671  T
Q  339 ccaagatgaaccaataatcccaagtcg--tttttattatta---ttattttctatcaaacaaaaatccaa 403  Q
     ||||||||||||||||||||||| ||  ||||||||||||   ||||||||| | ||||||||||||||    
T  21240672 tcaagatgaaccaataatcccaaggcgcctttttattattattgttattttct-taaaacaaaaatccaa 21240740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 265 - 380
Target Start/End: Complemental strand, 15346416 - 15346301
Alignment:
Q  265 agagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtc 364  Q
    ||||||| ||||||||| ||||||| |||||||||||||||| || |||| ||||||||||||| ||||||| |  |||||||||||||||||| |||      
T  15346416 agagaaacttgtctttaaaaaataggtccaacataagatttatgtataggatttggtttgtgaaagatttgttattaagatgaaccaataatccaaagaa 15346317  T
Q  365 gtttttattattatta 380  Q
    | ||||||||||||||    
T  15346316 gcttttattattatta 15346301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 264 - 370
Target Start/End: Complemental strand, 16148006 - 16147899
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||||||||||| ||||||||||||||  || ||| ||||||||||||||| |||| | |||||||||||||||||||||||||| ||||    
T  16148006 aagagaaacttgtctttagaaagtagatccaacataaagttctagctttagggtttggtttatgaagggtttgtcaccaagatgaaccaataatctcaag 16147907  T
Q  363 tcgttttt 370  Q
     |||||||    
T  16147906 gcgttttt 16147899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 244 - 376
Target Start/End: Complemental strand, 12059357 - 12059223
Alignment:
Q  244 aaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaa 342  Q
    ||||||||||||| | ||||| ||||||  |||||||||||| ||| ||||||||||  || ||||||||||||||||| ||||||  |||||||||||     
T  12059357 aaaggagatatgataggccaaggagaaacatgtctttagaaagtaggtccaacataaagttctaggtttagggtttggtctgtgaagaatttgtcaccat 12059258  T
Q  343 gatgaaccaataatcccaagtcg-tttttattatt 376  Q
    || ||||||||||||||||| || |||||||||||    
T  12059257 gacgaaccaataatcccaaggcgctttttattatt 12059223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 240 - 379
Target Start/End: Complemental strand, 20860279 - 20860138
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||| | ||| | || ||||||||| || |||||||||||||| ||||||||||  || ||| |||||||||||||||||||| |||||||||    
T  20860279 accgaaaggaggtgtgataggctaaagagaaacttctctttagaaaataggtccaacataaagttctagatttagggtttggtttgtgaaggatttgtca 20860180  T
Q  339 ccaagatgaaccaataatcccaagtcg-tttttattattatt 379  Q
    | |  | ||||||||||||||||| || ||||||||| ||||    
T  20860179 ctatcacgaaccaataatcccaaggcgctttttattactatt 20860138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 13799018 - 13798875
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | ||  |||||||| ||||||||||||| ||| |||||||| ||| | |||||||||| ||||||||||||| | ||||| |    
T  13799018 accgaaaggagatgtgataggcttaagagaaacttgtctttagaaagtaggtccaacataaagttctaggtttaggatttggtttgtgaagggtttgtaa 13798919  T
Q  339 ccaagatgaaccaat-aatcccaagtcgtttttattattattatt 382  Q
    || |||||||||||| ||||||||  || ||||||||||||||||    
T  13798918 cc-agatgaaccaataaatcccaatgcgcttttattattattatt 13798875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 362
Target Start/End: Complemental strand, 46143130 - 46143002
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||||| ||||||| ||| || |||||||| ||| |||||||  ||||||||||||||| ||||    
T  46143130 tgagaccgaaaggagatgtgataggctaaagagaaacttgtccttagaaattaggtctaacataaggttttaggtttaatggtttggtttgtgaaagatt 46143031  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||| ||| |||| |||||||||||||||    
T  46143030 tgtcgccatgatggaccaataatcccaag 46143002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 386
Target Start/End: Original strand, 41802773 - 41802925
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag-ggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || | ||| ||| ||||||||||||| ||  || |||||||| || |||| |||  ||||||||||||||| ||||    
T  41802773 tgagaccgaaaggagatgtgataggctagagataaacttgtctttagaaattacgtctaacataaggttctaggattaatggtttggtttgtgaaggatt 41802872  T
Q  334 tgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttct 386  Q
    |||| ||| || | ||||||||||||||| |  ||||||| ||||||||||||    
T  41802873 tgtcgccatgacggaccaataatcccaaggctcttttatttttattattttct 41802925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 391
Target Start/End: Original strand, 25727448 - 25727610
Alignment:
Q  231 ttcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaa 328  Q
    |||| ||||||||||||||||| ||| | |  ||| ||||| ||||||||||||| ||| || |||||||  || ||||||||  |||| ||||||||||    
T  25727448 ttcactgagaccgaaaggagatgtgatatggtaaacagaaacttgtctttagaaattaggtctaacataaagttctaggtttaaagttttggtttgtgaa 25727547  T
Q  329 tgatttgtcaccaagatgaaccaataatcccaagtc-gtttttattattattattttctatcaa 391  Q
     |||||||||  | |||||||||||||||||||| |  |||||||||||| |||||||| ||||    
T  25727548 ggatttgtcattatgatgaaccaataatcccaaggctctttttattatta-tattttctttcaa 25727610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 391
Target Start/End: Original strand, 25735856 - 25736018
Alignment:
Q  231 ttcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaa 328  Q
    |||| ||||||||||||||||| ||| | |  ||| ||||| ||||||||||||| ||| || |||||||  || ||||||||  |||| ||||||||||    
T  25735856 ttcactgagaccgaaaggagatgtgatatggtaaacagaaacttgtctttagaaattaggtctaacataaagttctaggtttaaagttttggtttgtgaa 25735955  T
Q  329 tgatttgtcaccaagatgaaccaataatcccaagtc-gtttttattattattattttctatcaa 391  Q
     |||||||||  | |||||||||||||||||||| |  |||||||||||| |||||||| ||||    
T  25735956 ggatttgtcattatgatgaaccaataatcccaaggctctttttattatta-tattttctttcaa 25736018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 236 - 382
Target Start/End: Original strand, 28208384 - 28208534
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag-ggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||| ||| || |||||||  || |||| |||  ||||||||||| ||| ||||    
T  28208384 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaattaggtctaacataaagttctaggattaaaggtttggtttgagaaggatt 28208483  T
Q  334 tgtcaccaagatgaaccaataatcccaag--tcgtttttattattattatt 382  Q
    ||||| || || |||||||||||| ||||   | |||||||||||||||||    
T  28208484 tgtcatcatgacgaaccaataatctcaaggcacctttttattattattatt 28208534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 176
Target Start/End: Original strand, 10783570 - 10783645
Alignment:
Q  101 gggaaatgctaacttgtgtcgataatgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaat 176  Q
    ||||||||||||||||||||   ||   | ||||||||||||||||| | ||||||||||||||||||||||||||    
T  10783570 gggaaatgctaacttgtgtcatcaagacataagttaatgagtcaaaaatggaaataatttattgtaattaatgaat 10783645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 356
Target Start/End: Original strand, 20412752 - 20412875
Alignment:
Q  235 ttgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataa-gatttaggtt-tagggtttggtttgtgaatgat 332  Q
    ||||||||||||| |||| ||| | || ||||||||| ||||||||| ||| ||| || ||||||| | ||||||||  ||||||||| ||||||| | |    
T  20412752 ttgagaccgaaagaagatgtgataggctaaagagaaacttgtctttaaaaattaggtctaacataaggttttaggttgaagggtttggattgtgaaggtt 20412851  T
Q  333 ttgtcaccaagatgaaccaataat 356  Q
    ||||||  ||||||||||||||||    
T  20412852 ttgtcataaagatgaaccaataat 20412875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 362
Target Start/End: Complemental strand, 52235495 - 52235448
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  52235495 gtttggtttgtgaaagatttgtcaccatgatgaaccaataatcccaag 52235448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 49055973 - 49056117
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataa-gatttaggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | ||  |||||||| || |||||||||| ||| ||||| |||| | ||||||||||||||||| |||||||| | |||||||    
T  49055973 accgaaaggagatgtgataggcttaagagaaacttatctttagaaagtaggtccaatataaagttttaggtttagggtttgatttgtgaagggtttgtca 49056072  T
Q  339 ccaagatgaaccaataatcccaagtcg--tttttattattattatt 382  Q
     | |||||||||||    |||||| ||  |||||||||||||||||    
T  49056073 tc-agatgaaccaaggtacccaaggcgcctttttattattattatt 49056117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 353
Target Start/End: Complemental strand, 52754935 - 52754816
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| ||||||||||||  ||| || ||||| ||| | ||||||| ||| ||||||||||||| | ||    
T  52754935 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaacttaggtctaacataaagttctaggtttaaggttttggtttgtgaagggtt 52754836  T
Q  334 tgtcaccaagatgaaccaat 353  Q
    |||||  | |||||||||||    
T  52754835 tgtcattatgatgaaccaat 52754816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 19365137 - 19365263
Alignment:
Q  238 agaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatttg 335  Q
    ||||||||||||| | ||| | || ||||||||| ||||| ||||||| ||| || ||||| || ||| |||||||  ||||| ||||||||| ||||||    
T  19365137 agaccgaaaggagttgtgataggctaaagagaaacttgtccttagaaattaggtctaacatgaggttttaggtttaatggtttagtttgtgaaagatttg 19365236  T
Q  336 tcaccaagatgaaccaataatcccaag 362  Q
    || ||| || | |||||||||||||||    
T  19365237 tcgccatgacggaccaataatcccaag 19365263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 379
Target Start/End: Original strand, 22411607 - 22411755
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacat-aagatttaggtttagggtttggtttgtgaatg 330  Q
    ||||||||||||||||||||| ||| | || ||||| ||| ||||||||||||| ||| || || || ||| |  ||||||||||||| ||||||||| |    
T  22411607 tcattgagaccgaaaggagatgtgataggctaaagataaacttgtctttagaaagtaggtcaaatataaagttagaggtttagggttt-gtttgtgaagg 22411705  T
Q  331 atttgtcaccaagatgaaccaataatcccaagtcgt-ttttattattatt 379  Q
    ||| ||    | |||||||| ||||||||||| | | |||||||||||||    
T  22411706 attcgttgttatgatgaaccgataatcccaaggcttcttttattattatt 22411755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 37316136 - 37316189
Alignment:
Q  133 gttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||||||||||||||||  ||||||||| |||||||||||  ||||||||||||    
T  37316136 gttaatgagtcaaaagtgaaaataatttgttgtaattaatatatttgaatttaa 37316189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 18379785 - 18379685
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagg-gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| ||||||||||||  ||| || |||||||| || ||||||||   |||||||||||||| ||||||||   | |||||||||||||||||||    
T  18379785 aagagaaacttgtctttagaagttaggtctaacataaggttctaggtttaatagtttggtttgtgaaggatttgtcgttaggatgaaccaataatcccaa 18379686  T
Q  362 g 362  Q
    |    
T  18379685 g 18379685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 416
Target Start/End: Original strand, 44538783 - 44538888
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtt----tttattattattattttctatcaaacaaaaatccaacttttta 410  Q
    ||||||||||||||||| ||||||   ||||||||||||||||||||| | ||    |||  | |||||||||||| | ||  ||||||||||||||| |    
T  44538783 gtttggtttgtgaatgacttgtcaattagatgaaccaataatcccaaggcttttatcttttcttttattattttcttttaattaaaaatccaacttttaa 44538882  T
Q  411 cctttg 416  Q
    ||||||    
T  44538883 cctttg 44538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 391
Target Start/End: Original strand, 1593714 - 1593832
Alignment:
Q  275 gtctttagaaaatagatccaacataa-gatttaggtttagggttt-ggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtc-gttttta 371  Q
    ||||||||||| ||| |  ||||||| | |||||||||| ||||| |||||||||| ||||||||   | |||||||||||||||||||| |  ||||||    
T  1593714 gtctttagaaattaggtttaacataaagttttaggtttaaggttttggtttgtgaaggatttgtcgttatgatgaaccaataatcccaagactcttttta 1593813  T
Q  372 ttattattattttctatcaa 391  Q
    |||||| |||||||| ||||    
T  1593814 ttatta-tattttctttcaa 1593832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 3150663 - 3150718
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    |||||||  |||||||||| |||||||||| |||||||||||  ||||||||||||    
T  3150663 aagttaacaagtcaaaagtggaaataatttgttgtaattaatacatttgaatttaa 3150718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 41228869 - 41228916
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||||||||| || ||||||  ||||||||||||||||||||||    
T  41228869 gtttggtttgtgaaggacttgtcaaaaagatgaaccaataatcccaag 41228916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 47206743 - 47206798
Alignment:
Q  131 aagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||||||||||| || ||||| ||| |||||||||||| |||| |||||||    
T  47206743 aagttaatgagtcaaaaataaaaatactttgttgtaattaatgtatttcaatttaa 47206798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 264 - 357
Target Start/End: Original strand, 48256821 - 48256916
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaatgatttgtcaccaagatgaaccaataatc 357  Q
    |||||||| ||||||||||| | ||| |  |||||||| || |||||||| ||||| |||||||||| ||||||||   |||||||||||||||||    
T  48256821 aagagaaacttgtctttagagattaggtttaacataaggttataggtttaaggttttggtttgtgaaggatttgtcgttaagatgaaccaataatc 48256916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 8649416 - 8649517
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag--ggtttggtttgtgaatgatttgtcaccaagatgaaccaataatccca 360  Q
    |||||||| ||||||||||||  |||||| |||||||| || ||||||||   | ||||||||||||| | |||||||||| || | |||||| ||||||    
T  8649416 aagagaaacttgtctttagaagttagatctaacataaggttctaggtttaatagttttggtttgtgaagggtttgtcaccatgacggaccaatgatccca 8649515  T
Q  361 ag 362  Q
    ||    
T  8649516 ag 8649517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 403
Target Start/End: Original strand, 17987106 - 17987244
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagg-gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||| ||| ||||||||||||  ||| || |||||||| || ||||||||   |||||||||||||| ||||||||   | |||||||||||||||||||    
T  17987106 aagataaacttgtctttagaagttaggtctaacataaggttctaggtttaatagtttggtttgtgaaggatttgtcgttaggatgaaccaataatcccaa 17987205  T
Q  362 gtcgtttttattattattattttctatcaaacaaaaatccaa 403  Q
    |  | ||||||| ||||||||||||  |||  ||||||||||    
T  17987206 g--gcttttatt-ttattattttcttccaattaaaaatccaa 17987244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 357
Target Start/End: Complemental strand, 12060044 - 12059960
Alignment:
Q  275 gtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaatgatttgtcaccaagatgaaccaataatc 357  Q
    ||||||||||| ||| || |||||||| || |||||||| ||||| |||||||||| ||||||||   | |||||||||||||||    
T  12060044 gtctttagaaattaggtctaacataaggttctaggtttaaggttttggtttgtgaaggatttgtcgttatgatgaaccaataatc 12059960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 19787822 - 19787722
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagg-gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| ||||||||||||  ||| || |||||||| || ||||||||   |||||||||||||| | |||||||||| ||  ||||||| |||||||    
T  19787822 aagagaaacttgtctttagaagttaggtctaacataaggttctaggtttaatagtttggtttgtgaagggtttgtcaccatgacaaaccaatgatcccaa 19787723  T
Q  362 g 362  Q
    |    
T  19787722 g 19787722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 379
Target Start/End: Original strand, 24680607 - 24680721
Alignment:
Q  265 agagaaatttgtctttagaaaatagatccaacataagatttaggt-ttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    ||||||||  ||||||||||| |||||  |||||||||||||||| |||||| |||| ||||||| |||||||||  | || |||||||||| ||| |      
T  24680607 agagaaatcggtctttagaaa-tagatttaacataagatttaggtattaggg-ttggattgtgaaagatttgtcattatgacgaaccaataaccccgatg 24680704  T
Q  364 cg-tttttattattatt 379  Q
    || ||||||||||||||    
T  24680705 cgctttttattattatt 24680721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 218 - 384
Target Start/End: Original strand, 39018 - 39184
Alignment:
Q  218 ctattgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtt 317  Q
    |||||||| ||||||||| |||||| ||||| |||||||||||| ||||||||| | |||||||||||| |||  |||||||||||||||||||||||||    
T  39018 ctattgaaatacattcatcgagacccaaaggtgatatgaaaagcgaaagagaaactcgtctttagaaaaaagaggcaacataagatttaggtttagggtt 39117  T
Q  318 tggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattatttt 384  Q
    ||| ||||||   |||||||||||||| |||||||||| || ||   |||||| |||||||||||||    
T  39118 tggcttgtgacatatttgtcaccaagacgaaccaataagccaaaagagtttttgttattattatttt 39184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 33895 - 34071
Alignment:
Q  17 agcaaaaaggatgaaaataaaaagtgaatcctatgttaccattggt----gctttgaatttaaaa-ttaaatgatttgtatttctttttgggaaatgcta 111  Q
    |||||||| || ||||||||||| ||||||||||||||||||||||    ||||||| ||||||| |||||||||||||||||| |||||||||||| ||    
T  33895 agcaaaaaagaagaaaataaaaaatgaatcctatgttaccattggttgctgctttgattttaaaaattaaatgatttgtatttcgttttgggaaatgata 33994  T
Q  112 acttgtgtcgata--atgtaaaagttaatgagtcaaaagtagaaataatttattgtaattaatgaatttgaatttaa 186  Q
    ||||||||| |||  ||  | ||||||||| |||||||||| ||||| || ||||||||||||  ||||||||||||    
T  33995 acttgtgtccataagatacacaagttaatgcgtcaaaagtaaaaatatttcattgtaattaatacatttgaatttaa 34071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 227 - 379
Target Start/End: Complemental strand, 22334 - 22181
Alignment:
Q  227 tacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgt 325  Q
    |||| ||| ||||||| ||||||||| ||| | |||||||||||||||||||||||||| ||| ||||||||||| || |||||||||||||| | ||||    
T  22334 tacactcactgagaccaaaaggagatgtgataggccaaagagaaatttgtctttagaaagtaggtccaacataaggttctaggtttagggttttgcttgt 22235  T
Q  326 gaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattatt 379  Q
    ||| |||||||||||| || ||||||||||||||||| |  |||||| ||||||    
T  22234 gaaggatttgtcaccatgacgaaccaataatcccaaggctcttttataattatt 22181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 355
Target Start/End: Complemental strand, 53823 - 53703
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgattt 334  Q
    ||||||||||||||||| ||| | ||  |||||||| ||||| ||||||| | | || || ||||  || ||| |||||||||||||||||||| |||||    
T  53823 tgagaccgaaaggagatgtgataggcttaagagaaacttgtccttagaaagtgggtctaatataaagttctagatttagggtttggtttgtgaaggattt 53724  T
Q  335 gtcaccaagatgaaccaataa 355  Q
    |||| ||||||||||||||||    
T  53723 gtcaacaagatgaaccaataa 53703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 238 - 378
Target Start/End: Original strand, 33378 - 33519
Alignment:
Q  238 agaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgt 336  Q
    |||| |||||||||| ||| | || ||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||    
T  33378 agactgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaggttctaggtttagggtttggtttgtgaaagatttgt 33477  T
Q  337 caccaagatgaaccaataatcccaagtcgtttttattattat 378  Q
    ||||| || ||| |||||||| ||||  ||||||||||||||    
T  33478 caccatgacgaaacaataatctcaaggagtttttattattat 33519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 238 - 378
Target Start/End: Original strand, 38685 - 38826
Alignment:
Q  238 agaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgt 336  Q
    |||| |||||||||| ||| | || ||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||||||||||| |||||||    
T  38685 agactgaaaggagatgtgataggctaaagagaaacttgtctttagaaaataggtccaacataaggttctaggtttagggtttggtttgtgaaagatttgt 38784  T
Q  337 caccaagatgaaccaataatcccaagtcgtttttattattat 378  Q
    ||||| || ||| |||||||| ||||  ||||||||||||||    
T  38785 caccatgacgaaacaataatctcaaggagtttttattattat 38826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 232 - 377
Target Start/End: Original strand, 521248 - 521395
Alignment:
Q  232 tcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatg 330  Q
    ||||||| ||||||||||||| ||| | |   |||||||| ||||||||||||| ||| ||||||||||  || |||||||||||||||||||||||| |    
T  521248 tcattgaaaccgaaaggagatgtgataggattaagagaaacttgtctttagaaagtaggtccaacataaagttataggtttagggtttggtttgtgaagg 521347  T
Q  331 atttgtcaccaagatgaaccaataatcccaagtcg-tttttattatta 377  Q
     ||||||||||||||||||||||||||||||  || ||||||||||||    
T  521348 gtttgtcaccaagatgaaccaataatcccaaagcgctttttattatta 521395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 228 - 379
Target Start/End: Complemental strand, 82203 - 82051
Alignment:
Q  228 acattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtg 326  Q
    ||||||| |||||| |||||||||| ||| | || ||| ||||| ||||||||||||||||| ||||||||||  || |||| |||||||||| ||||||    
T  82203 acattcactgagactgaaaggagatgtgataggctaaacagaaacttgtctttagaaaataggtccaacataaagttctaggcttagggtttgatttgtg 82104  T
Q  327 aatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattatt 379  Q
    || ||||||||| || || ||||||||||||||||  || |||||||||||||    
T  82103 aaagatttgtcatcatgacgaaccaataatcccaatacgcttttattattatt 82051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 222 - 408
Target Start/End: Original strand, 31603 - 31792
Alignment:
Q  222 tgaattacattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttgg 320  Q
    |||| |||| ||| ||||||||||||||||| || || |  ||||||||| ||||||||||||||||| ||||||||||| || ||||||||| |||||     
T  31603 tgaaatacactcactgagaccgaaaggagatgtgcaaggataaagagaaacttgtctttagaaaataggtccaacataaggttctaggtttagagtttga 31702  T
Q  321 tttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgttttta---ttattattattttctatcaaacaaaaatccaactttt 408  Q
    |||||||| ||||||| | || || ||||||||||||||||| |  |||||   ||||| ||||||||| | |||| ||||||||||||||    
T  31703 tttgtgaaggatttgttatcatgacgaaccaataatcccaagacacttttattgttattgttattttcttttaaac-aaaatccaactttt 31792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 236 - 362
Target Start/End: Complemental strand, 14201 - 14073
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagattt-aggtttag-ggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||||||| | || ||||||||| ||||| ||||||| ||| |  ||||| || ||| |||||||  ||||||||||||||| ||||    
T  14201 tgagaccgaaaggagatatgataggctaaagagaaacttgtccttagaaattaggtttaacatgaggttttaggtttaatggtttggtttgtgaaagatt 14102  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||| ||| |||| |||||||||||||||    
T  14101 tgtcgccatgatggaccaataatcccaag 14073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 14610 - 14710
Alignment:
Q  263 aaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    ||||||||| ||||||||||||||||| ||||||||||  || |||||||||| ||||||||||||| |||||||||||| || ||||||||||||||||    
T  14610 aaagagaaacttgtctttagaaaataggtccaacataaagttctaggtttaggatttggtttgtgaaggatttgtcaccatgacgaaccaataatcccaa 14709  T
Q  362 g 362  Q
    |    
T  14710 g 14710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 264 - 403
Target Start/End: Original strand, 100736 - 100875
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| ||||| ||||  |||||||||| |||||||||| |||||| |||||||  ||||||||||||||||||||||     
T  100736 aagagaaacttgtctttagaaagtaggtccaatataaagtttaggtttatggtttggttt-tgaatggtttgtcattaagatgaaccaataatcccaagg 100834  T
Q  364 c-gtttttattattattattttctatcaaacaaaaatccaa 403  Q
    |  |||||||| |||||||||||| | ||  ||||||||||    
T  100835 ctctttttatttttattattttcttttaattaaaaatccaa 100875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1092 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1092
Description:

Target: scaffold1092; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 362
Target Start/End: Complemental strand, 1294 - 1164
Alignment:
Q  234 attgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag-ggtttggtttgtgaatga 331  Q
    ||||||||||||||||||| ||| | || ||||||||| ||||||||||||| ||| || |||||||| || ||||||||| |||||||||| |||| ||    
T  1294 attgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaattaggtctaacataaggttctaggtttagtggtttggtttatgaagga 1195  T
Q  332 tttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||| ||| || | |||||||||||||||    
T  1194 tttgtcgccatgacggaccaataatcccaag 1164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1058 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1058
Description:

Target: scaffold1058; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 362
Target Start/End: Complemental strand, 2671 - 2541
Alignment:
Q  234 attgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag-ggtttggtttgtgaatga 331  Q
    ||||||||||||||||||| ||| | || ||||||||| ||||||||||||| ||| || |||||||| || ||||||||| |||||||||| |||| ||    
T  2671 attgagaccgaaaggagatgtgataggctaaagagaaacttgtctttagaaattaggtctaacataaggttctaggtttagtggtttggtttatgaagga 2572  T
Q  332 tttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||| ||| || | |||||||||||||||    
T  2571 tttgtcgccatgacggaccaataatcccaag 2541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 236 - 362
Target Start/End: Complemental strand, 43897 - 43769
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttag-ggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | ||  |||||||| ||||||||||||| ||| || |||||||  || ||| ||||  ||||||||||||||| ||||    
T  43897 tgagaccgaaaggagatgtgataggctgaagagaaacttgtctttagaaagtaggtctaacataaagttctagatttaaaggtttggtttgtgaaggatt 43798  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||||||||||||||||||    
T  43797 tgtcaccatgatgaaccaataatcccaag 43769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 240 - 376
Target Start/End: Complemental strand, 4391 - 4253
Alignment:
Q  240 accgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtca 338  Q
    ||||||||||||| ||| | ||  |||||||| |||| |||||||| ||| ||||| ||||  || || ||||||||||||||||||||| | |||||||    
T  4391 accgaaaggagatgtgataggcttaagagaaacttgtatttagaaagtaggtccaatataaagttctatgtttagggtttggtttgtgaagggtttgtca 4292  T
Q  339 ccaagatgaaccaataatcccaagtcg-tttttattatt 376  Q
     |||||||||||||||||| |||| || |||||||||||    
T  4291 tcaagatgaaccaataatctcaaggcgctttttattatt 4253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 362
Target Start/End: Complemental strand, 111089 - 110962
Alignment:
Q  237 gagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataa-gatttaggttt-agggtttggtttgtgaatgattt 334  Q
    ||||||||||| |||| ||| | || ||||||||||||||||||||||| ||| || ||||||| | ||||||||| | ||||||||||||||| | |||    
T  111089 gagaccgaaagaagatgtgataggctaaagagaaatttgtctttagaaattaggtctaacataaggttttaggtttaaaggtttggtttgtgaagggttt 110990  T
Q  335 gtcaccaagatgaaccaataatcccaag 362  Q
    ||||||| |||| |||||||||| ||||    
T  110989 gtcaccatgatggaccaataatctcaag 110962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 264 - 376
Target Start/End: Original strand, 175436 - 175550
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||||||||||| ||| ||||| ||||  || ||||||||||||||||||||| || | ||||||| |||||||||||||||||| ||||    
T  175436 aagagaaacttgtctttagaaagtaggtccaatataaatttctaggtttagggtttggtttgtaaagggtttgtcatcaagatgaaccaataatctcaag 175535  T
Q  363 tcg-tttttattatt 376  Q
     || |||||||||||    
T  175536 gcgctttttattatt 175550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 228 - 385
Target Start/End: Complemental strand, 4059 - 3902
Alignment:
Q  228 acattcattgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgtg 326  Q
    ||||||| ||| ||||||||||||| ||| | ||  |||||||| || |||||| ||| | | || |||||||  || ||||||||||||||||||| ||    
T  4059 acattcactgaaaccgaaaggagatgtgataggcttaagagaaacttatctttaaaaagtgggtcaaacataaagttctaggtttagggtttggtttatg 3960  T
Q  327 aatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttc 385  Q
    || | ||||||| | ||||||||||||||||||||  || |||| ||||||||||||||    
T  3959 aagggtttgtcatctagatgaaccaataatcccaatgcgctttt-ttattattattttc 3902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 382
Target Start/End: Complemental strand, 8780 - 8664
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| ||| ||||| ||||  |||||||||||| ||| |||| |||| | |||||||  ||||||||||||||||||||||     
T  8780 aagagaaacttgtctttagaaagtaggtccaatataaagtttaggtttaggattt-gtttttgaagggtttgtcattaagatgaaccaataatcccaagg 8682  T
Q  364 cgtttttattattattatt 382  Q
    || ||||||| ||||||||    
T  8681 cgcttttatt-ttattatt 8664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0773 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0773
Description:

Target: scaffold0773; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 1618 - 1746
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggttt-agggtttggtttgtgaatgatt 333  Q
    ||||||||||||||||| ||| | || ||||||||| |||||||| |||| ||| || |||||||| || ||||||| | ||||||||||| ||| | ||    
T  1618 tgagaccgaaaggagatgtgataggctaaagagaaacttgtctttggaaattaggtctaacataaggttctaggtttaatggtttggtttgagaagggtt 1717  T
Q  334 tgtcaccaagatgaaccaataatcccaag 362  Q
    |||| ||| |||| |||||||||||||||    
T  1718 tgtcgccatgatggaccaataatcccaag 1746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 264 - 403
Target Start/End: Complemental strand, 21992 - 21853
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagt 363  Q
    |||||||| ||||||||||||| | | ||||| ||||  ||  |||| |||||||| |||||||| ||||||||| | ||||||||||||||||||||      
T  21992 aagagaaacttgtctttagaaagtgggtccaatataaagttctggttgagggtttgttttgtgaaggatttgtcatctagatgaaccaataatcccaatg 21893  T
Q  364 cgtttttattattattattttctatcaaacaaaaatccaa 403  Q
     | ||||||| |||||||| ||| | ||  ||||||||||    
T  21892 tgcttttatttttattattctcttttaattaaaaatccaa 21853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 362
Target Start/End: Complemental strand, 6264 - 6167
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatttaggtttagggtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||| ||||||||||||| ||| | ||| ||||  |||||||||||||||| ||||||||| || ||||||| | || |||||||||||||||||    
T  6264 aagagaaacttgtctttagaaagtaggttcaatataaagtttaggtttagggttt-gtttgtgaaggaattgtcactatgacgaaccaataatcccaag 6167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 325
Target Start/End: Original strand, 22097 - 22187
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggtttggtttgt 325  Q
    ||||| ||||||||||  ||| | || ||||||||| |||||||| |||||||| ||||||||||  || |||||||||||||||||||||    
T  22097 tgagatcgaaaggagacgtgataggctaaagagaaaattgtctttcgaaaataggtccaacataaagttctaggtttagggtttggtttgt 22187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 386
Target Start/End: Complemental strand, 8414 - 8262
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatt-taggtttaggg-tttggtttgtgaatgatt 333  Q
    |||||||||||||| || ||| |  | ||||||||| ||||||||||||| ||| || || ||||| || ||||||||  | ||||||||||||| | ||    
T  8414 tgagaccgaaaggatatgtgatagactaaagagaaacttgtctttagaaattaggtctaaaataaggttctaggtttaatgatttggtttgtgaagggtt 8315  T
Q  334 tgtcaccaagatgaaccaataatcccaagtcgtttttattattattattttct 386  Q
    |||| ||| || | ||||||||||||||  |  ||||||| ||||||||||||    
T  8314 tgtcgccatgacggaccaataatcccaaagctcttttatttttattattttct 8262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 362
Target Start/End: Original strand, 78380 - 78480
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagggttt-ggtttgtgaatgatttgtcaccaagatgaaccaataatcccaa 361  Q
    |||||||| ||||||||||||| ||| || |||||||| || ||||||||  |||| |||||||||| |||||||| ||| || | ||||||||||||||    
T  78380 aagagaaacttgtctttagaaattaggtctaacataaggttctaggtttaacgttttggtttgtgaaagatttgtcgccatgacggaccaataatcccaa 78479  T
Q  362 g 362  Q
    |    
T  78480 g 78480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 264 - 359
Target Start/End: Original strand, 100939 - 101036
Alignment:
Q  264 aagagaaatttgtctttagaaaatagatccaacataagatt-taggtttagg-gtttggtttgtgaatgatttgtcaccaagatgaaccaataatccc 359  Q
    |||||||| ||||||||||||| ||| || |||||||| || || |||||   ||||||||||||||||| ||||||   ||||||||||||||||||    
T  100939 aagagaaacttgtctttagaaagtaggtctaacataaggttataagtttaatagtttggtttgtgaatgacttgtcaattagatgaaccaataatccc 101036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 236 - 340
Target Start/End: Complemental strand, 17012 - 16907
Alignment:
Q  236 tgagaccgaaaggagatatgaaaagccaaagagaaatttgtctttagaaaatagatccaacataagatttaggttt-agggtttggtttgtgaatgattt 334  Q
    ||||||||| ||||||| ||| | ||  |||||||| | ||||||||||| ||| || || ||||| ||||||||| | || |||| |||||||||||||    
T  17012 tgagaccgataggagatgtgataggcttaagagaaactcgtctttagaaactaggtctaaaataaggtttaggtttaatggcttgggttgtgaatgattt 16913  T
Q  335 gtcacc 340  Q
    ||||||    
T  16912 gtcacc 16907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 362
Target Start/End: Original strand, 4116 - 4163
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaag 362  Q
    |||||||||||||| |||||||||||| || |||||||||||| ||||    
T  4116 gtttggtttgtgaaggatttgtcaccatgacgaaccaataatctcaag 4163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 18422 - 18320
Alignment:
Q  315 gtttggtttgtgaatgatttgtcaccaagatgaaccaataatcccaagtcgtttttattat-tattattttctatcaaacaaaaatccaactttttacct 413  Q
    |||||||||||||| || ||||||   ||||||||||||||||||||||| ||| | || | | ||||||||| | ||  || |||||||||||| ||||    
T  18422 gtttggtttgtgaaggacttgtcaattagatgaaccaataatcccaagtcttttatcttttcttttattttcttttaattaagaatccaacttttaacct 18323  T
Q  414 ttg 416  Q
    |||    
T  18322 ttg 18320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University