View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2733_low_1 (Length: 874)
Name: NF2733_low_1
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2733_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 639; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 139 - 858
Target Start/End: Complemental strand, 30186101 - 30185381
Alignment:
| Q |
139 |
cagttcaaaatttgcgttttactgtacaaaacttttgttatgctagtttacactttgcaccaatactgaatttgaacaccagtcccaaggcacacatact |
238 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30186101 |
cagttcaaaatttgcgttttattgtacaaaacttttgttatgctagtttacactttgcaccaatactgaatttgaacaccagtcccaaggcacacatact |
30186002 |
T |
|
| Q |
239 |
aaggagttcatttagtacaaaaatagtttaaattcatcaccacagaactaattttttatgaagtttagaattttctaactttgaaactattgtccaacca |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30186001 |
aaggagttcatttagtacaaaaatagtttaaattcatcaccacagaactaattttttatgaagtttagaattttctaactttgaaactattgtccaacta |
30185902 |
T |
|
| Q |
339 |
aattgttcacagtgaaaaaagaggcagccagcaacacaa--tatagtttcatcacccaccaactagcatgcctggttagactgaactagatgatgcttag |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30185901 |
aattgttcacagtgaaaaaagaggcagccagcaacacaaaatatagtt-catcacccaccaactagcatgcctggttagactgaactagatgatgcttag |
30185803 |
T |
|
| Q |
437 |
ataaaatattactagaggaaatttttcacacattgttatttagttaggttcgtatagtgtcaagatgtatattaaagttgaaaaccagttaccaaaactc |
536 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30185802 |
attaaatattactagaggaaatttttcacacattgttatttagttaggtccgtatagtgtcaagatgtatattaaagttgaaaaccagttaccaaaactc |
30185703 |
T |
|
| Q |
537 |
tgttttcacacctaaaagattatctaagtaattcttctccagttctttctagtcactaccatcatctactttgcatcatatcaataacattaacacccta |
636 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30185702 |
tgttttcacacctaaaagatgatctaagtaattcttctccatttctttctagtcactaccatcatctactttgcatcatatcaataacattaacacccta |
30185603 |
T |
|
| Q |
637 |
agcnnnnnnnnttatataactataagtataaaatgcaaagcaacaaccttatacgctttctttgcaactgaatatgagcacttgaattttgcaaaaactc |
736 |
Q |
| |
|
||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30185602 |
agcaaaaaaaattatataactataaatataaaatgcaaggcaacaaccttatacgctttctttgcaactgaatatgagcacttgaattttgcaaaaactc |
30185503 |
T |
|
| Q |
737 |
gtgctgcagccaattttataggcaatgatacttctggtgagttcatcatgttaaacagcatctccaacgtaatacatgcaaaatcatctgatctctcaca |
836 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30185502 |
gtgctgcagccaattttataggcaatgatacttctggtgagttcatcatgttaaaaagcatctccaacgtaatacatgcaaaatcatctgatatctcaca |
30185403 |
T |
|
| Q |
837 |
aaagcaaccggcagcaaataat |
858 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30185402 |
aaagcaaccggcagcaaataat |
30185381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 30186232 - 30186138
Alignment:
| Q |
10 |
aagaatatcttcatttgaagaatttgatatcagatctagacctatctgcatcaaataaatcataacataagaaaactgaaatgcgtgatagtccc |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30186232 |
aagaatatcttcatttgaagaatttgatatcagatctagacctatctgcatcaaataaatcataacataagaaaactgaaatgcgtgatagtccc |
30186138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 4e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 167 - 415
Target Start/End: Original strand, 18200747 - 18200989
Alignment:
| Q |
167 |
aaacttttgttatgctagtttacactttgcaccaatactgaatttgaacaccagtcccaaggcacacatactaaggagttcatttagtacaaaaatagtt |
266 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18200747 |
aaactattgttgtgctagtttacactttgcaccaatattgaatttgaacaccagtcctgagggacacatactaaggagttcatttggtacaaaaatagtt |
18200846 |
T |
|
| Q |
267 |
taaattcatcaccacagaactaattttttatgaagtttagaattttctaactttgaaactattgtccaaccaaattgttcacagtgaaaaaagaggcagc |
366 |
Q |
| |
|
|||| ||||||||| ||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
18200847 |
taaactcatcaccattgaactaattttttataaagttaagatttttctaattttgaaactattgtccaaccaaattgtt--ctttgaaaaaagagg---- |
18200940 |
T |
|
| Q |
367 |
cagcaacacaatatagtttcatcacccaccaactagcatgcctggttag |
415 |
Q |
| |
|
|||||||| || ||||||||| |||||| ||||||| |||||||||||| |
|
|
| T |
18200941 |
cagcaacataaaatagtttcaccacccatcaactagaatgcctggttag |
18200989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 438 - 508
Target Start/End: Original strand, 18201703 - 18201773
Alignment:
| Q |
438 |
taaaatattactagaggaaatttttcacacattgttatttagttaggttcgtatagtgtcaagatgtatat |
508 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| ||||||| ||| |||||| ||||||||||| |
|
|
| T |
18201703 |
taaaatattactagaagaaatttttcacacattgttatttggttaggtccgtgtagtgttaagatgtatat |
18201773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University