View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2733_low_13 (Length: 351)
Name: NF2733_low_13
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2733_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 2117170 - 2116845
Alignment:
| Q |
18 |
atagaagtggggataaaaatctaagaaaaatttctattcaagttaagggacaagtcatctcataagaagaggagttagtttactggtttaatgcatatat |
117 |
Q |
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| T |
2117170 |
atagaagtggggataaaaatctaagaaaaatttctattcaagttaagggacaagtcatctcataagaagaggagttagtttactggtttaatgcatatat |
2117071 |
T |
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| Q |
118 |
cacatgagattattcatgtactatatgcttataaaactcagttagtttgagagttgttaacnnnnnnnttgttcgttaaccctctctatataaaatataa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2117070 |
cacatgagattattcatgtactatatgcttataaaactcagttagtttgagagttgttaacaaaaaaattgttcgttaaccctctctatataaaatataa |
2116971 |
T |
|
| Q |
218 |
atatgccataatgttttcttttaaaaaattatctccatacaagtaagatactgtttacatcttagattagtttctttaagtgactagaccaaagatagac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2116970 |
atatgccataatgttttcttttaaaaaattatctccatacaagtaagatactgtttacatcttagattagtttctttaagtgactagaccaaagatagac |
2116871 |
T |
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| Q |
318 |
caatatctatctagctggagaataat |
343 |
Q |
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||||||||||||||||||| |||||| |
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| T |
2116870 |
caatatctatctagctggataataat |
2116845 |
T |
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