View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2733_low_15 (Length: 312)

Name: NF2733_low_15
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2733_low_15
NF2733_low_15
[»] chr3 (5 HSPs)
chr3 (13-296)||(1657142-1657422)
chr3 (36-237)||(51113768-51113966)
chr3 (37-220)||(51764444-51764624)
chr3 (36-142)||(514807-514913)
chr3 (166-220)||(51120897-51120951)
[»] chr6 (10 HSPs)
chr6 (15-296)||(11936199-11936481)
chr6 (15-296)||(11948179-11948461)
chr6 (150-235)||(6423242-6423327)
chr6 (166-222)||(12102307-12102363)
chr6 (36-217)||(6415880-6416058)
chr6 (174-222)||(9411404-9411452)
chr6 (166-220)||(6432202-6432256)
chr6 (162-220)||(28935086-28935144)
chr6 (27-80)||(28934954-28935007)
chr6 (144-200)||(10579760-10579816)
[»] chr8 (7 HSPs)
chr8 (15-296)||(28246219-28246499)
chr8 (166-220)||(21235599-21235653)
chr8 (110-240)||(18315257-18315384)
chr8 (150-216)||(34936171-34936237)
chr8 (173-220)||(27922556-27922603)
chr8 (162-220)||(17636405-17636463)
chr8 (110-220)||(32151289-32151396)
[»] chr4 (20 HSPs)
chr4 (15-292)||(644724-645001)
chr4 (166-294)||(553520-553652)
chr4 (150-220)||(8184034-8184104)
chr4 (18-77)||(12121601-12121660)
chr4 (162-220)||(1600456-1600514)
chr4 (166-235)||(1545814-1545883)
chr4 (166-222)||(570392-570448)
chr4 (173-220)||(1513411-1513458)
chr4 (161-220)||(8187095-8187154)
chr4 (166-220)||(1519146-1519200)
chr4 (180-220)||(1548428-1548468)
chr4 (27-90)||(553384-553447)
chr4 (247-290)||(566315-566358)
chr4 (173-220)||(1489365-1489412)
chr4 (18-77)||(1513548-1513607)
chr4 (173-220)||(1537771-1537818)
chr4 (173-220)||(12121461-12121508)
chr4 (180-218)||(21834384-21834422)
chr4 (110-220)||(1524490-1524597)
chr4 (152-220)||(53761776-53761844)
[»] chr5 (6 HSPs)
chr5 (166-217)||(41901542-41901593)
chr5 (166-218)||(38267562-38267614)
chr5 (252-296)||(41901462-41901506)
chr5 (166-286)||(41889488-41889612)
chr5 (252-285)||(32267603-32267636)
chr5 (180-220)||(32267530-32267570)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 1657142 - 1657422
Alignment:
Q  13 tcatcacaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcgacaccttcacaaaatttaagtgaca 112  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  1657142 tcatcacagtacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcaacaccttcacaaaatttaagtgaca 1657241  T
Q  113 gttgcaaaagcccgctgcaactctttgagacgatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttc 212  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1657242 gttgcaaaagcccgctgcaactctttgaga---tccaatagagtgatatattgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttc 1657338  T
Q  213 aaagttcaatgtacgtagcttcagtcttagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaata 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1657339 aaagttcaatgtacgtagcttcagtcttagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaata 1657422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 237
Target Start/End: Complemental strand, 51113966 - 51113768
Alignment:
Q  36 ctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcgacaccttcacaaaatttaagtgacagttgcaaaagcccgctgcaactc 135  Q
    |||||| |||| |||||||||||| ||||||||| ||||||| || |||| ||||   | ||||  ||| ||| |||||||||||||||| |  ||||||    
T  51113966 ctctcttagttttgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactc 51113867  T
Q  136 tttgagacgatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttca 235  Q
    || ||||   ||  |||||||| |  ||| |||||  |||||  ||||||||| |||||||||||||||||| |||||||||||| |  | |||||||||    
T  51113866 ttcgaga---tcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttca 51113770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 220
Target Start/End: Complemental strand, 51764624 - 51764444
Alignment:
Q  37 tctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcgacaccttcacaaaatttaagtgacagttgcaaaagcccgctgcaactct 136  Q
    ||||||| ||||||||| ||||||||||||||  ||||||| || ||   ||||   ||||||  ||  ||| | ||||||||||||||||  ||| |||    
T  51764624 tctctcaattgtgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattct 51764525  T
Q  137 ttgagacgatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||||   ||  |||||||| | |||| |||||| |||||||||||||||| ||||||||||| || |||||| |||||||||    
T  51764524 ttgaga---tcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttca 51764444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 514913 - 514807
Alignment:
Q  36 ctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcgacaccttcacaaaatttaagtgacagttgcaaaagcccgctgcaactc 135  Q
    |||||||||| ||||||| ||||  ||||||||| |||||||  | |||| || ||||||||||  ||  ||| | |||||||||||||| | |||||||    
T  514913 ctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccacagcaactc 514814  T
Q  136 tttgaga 142  Q
    || ||||    
T  514813 ttcgaga 514807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 51120951 - 51120897
Alignment:
Q  166 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||||||||||   ||||||| ||||||||||| |||| |||||||||||||||    
T  51120951 tcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttca 51120897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 11936481 - 11936199
Alignment:
Q  15 atcacaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcgacaccttcacaaaatttaagtgacagt 114  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11936481 atcacagtacttcaaatcgacctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagt 11936382  T
Q  115 tgcaaaagcccgctgcaactctttgagacgatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaa 214  Q
    ||||||||||| || |||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11936381 tgcaaaagcccactacaactctttga---gatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaa 11936285  T
Q  215 agttcaatgtacgtagcttcagtctt----agcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaata 296  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11936284 agttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaata 11936199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 11948461 - 11948179
Alignment:
Q  15 atcacaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcgacaccttcacaaaatttaagtgacagt 114  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  11948461 atcacagtacttcaaatcgacctctctcatttgtgtgcatttttcaaccacatgcgtcactcctttgtctgtgacaccttcacaaaatttaagtgacagt 11948362  T
Q  115 tgcaaaagcccgctgcaactctttgagacgatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaa 214  Q
    ||||||||||| || |||||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11948361 tgcaaaagcccactacaactctttga---gatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaa 11948265  T
Q  215 agttcaatgtacgtagcttcagtctt----agcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaata 296  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11948264 agttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaata 11948179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 235
Target Start/End: Original strand, 6423242 - 6423327
Alignment:
Q  150 atagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttca 235  Q
    |||||||| | |||||  ||||||||||  |||||||| |||||||||||| |||||||||| |||||||| || |||||||||||    
T  6423242 atagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattgcacgtagcttca 6423327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 12102307 - 12102363
Alignment:
Q  166 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaat 222  Q
    ||||||| ||||  |||||||| ||||||||||||||||||||||||||||||||||    
T  12102307 tcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaat 12102363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 6415880 - 6416058
Alignment:
Q  36 ctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcgacaccttcacaaaatttaagtgacagttgcaaaagcccgctgcaactc 135  Q
    |||||| ||||||||||| || || ||||||||  |||||||    |||| ||||   |||||||||| |||| | ||||||||||||||||| ||| ||    
T  6415880 ctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattc 6415979  T
Q  136 tttgagacgatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagt 217  Q
    |||||   ||||  |||||| | | |||| | |||  |||||  |||||||| |||||||||||| ||||||||| ||||||    
T  6415980 tttga---gatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagt 6416058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 9411404 - 9411452
Alignment:
Q  174 tgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaat 222  Q
    |||| ||||||||| |||||||||||| |||||||| ||||||||||||    
T  9411404 tgtatatgacaagttcaacacctccagcttgggaacctcaaagttcaat 9411452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 6432202 - 6432256
Alignment:
Q  166 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||| ||||||  |||||||| |||||||| ||| |||||||||||||||||||    
T  6432202 tcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttca 6432256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 28935086 - 28935144
Alignment:
Q  162 atcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||||||||||||||  |||||||| ||||||||| |||| |||||| ||||| ||||    
T  28935086 atcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttca 28935144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 28934954 - 28935007
Alignment:
Q  27 caaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactccttt 80  Q
    ||||| || |||||| ||||||||||| ||||| ||||||||| ||||||||||    
T  28934954 caaatagatctctcttagttgtgtgcaattttctaccacatgcttcactccttt 28935007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 10579816 - 10579760
Alignment:
Q  144 gatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccag 200  Q
    |||| ||||||||| | |||| |||||| ||||| ||||||||| ||||||||||||    
T  10579816 gatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctccag 10579760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 28246499 - 28246219
Alignment:
Q  15 atcacaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcgacaccttcacaaaatttaagtgacagt 114  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  28246499 atcacagtacttcaaattgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcatttgtctgtgacaccttcacaaaatttaagtgacagt 28246400  T
Q  115 tgcaaaagcccgctgcaactctttgagacgatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaa 214  Q
    |||||||||||||| |||||||||||   |||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28246399 tgcaaaagcccgctacaactctttga---gatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaa 28246305  T
Q  215 agttcaatgtacgtagcttcagtctt----agcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaata 296  Q
    ||||||||||| ||||||||||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28246304 agttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaacaata 28246219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 21235599 - 21235653
Alignment:
Q  166 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||    
T  21235599 tcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 18315384 - 18315257
Alignment:
Q  110 acagttgcaaaagcccgctgcaactctttgagacgatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaac 209  Q
    |||||||||||||||  |  |||||||||||||   ||  |||||||| |  ||| |||||| |||||  |||||||| |||||||||||||||||||||    
T  18315384 acagttgcaaaagcctacgacaactctttgaga---tcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaac 18315288  T
Q  210 ttcaaagttcaatgtacgtagcttcagtctt 240  Q
    || |||||||| |  ||||||||||| ||||    
T  18315287 tttaaagttcattccacgtagcttcattctt 18315257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 216
Target Start/End: Complemental strand, 34936237 - 34936171
Alignment:
Q  150 atagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaag 216  Q
    |||||||| | |||| |||||||||||| ||||||||||||||||||| ||||| ||||| ||||||    
T  34936237 atagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaag 34936171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 27922556 - 27922603
Alignment:
Q  173 ttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||||||||    
T  27922556 ttgtatatgacaagttcaacacctccaatttgggaacttcaaagttca 27922603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 17636463 - 17636405
Alignment:
Q  162 atcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||||||||| |||   |||||||| ||||||||||| ||||||||||||||||||||    
T  17636463 atcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttca 17636405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 32151289 - 32151396
Alignment:
Q  110 acagttgcaaaagcccgctgcaactctttgagacgatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaac 209  Q
    |||||||||||||||| || |||||||||||||   ||  |||||||| |  ||| ||||  |||||| |||||||||  ||||||||||| |||| |||    
T  32151289 acagttgcaaaagcccactacaactctttgaga---tcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaac 32151385  T
Q  210 ttcaaagttca 220  Q
    ||| |||||||    
T  32151386 ttcgaagttca 32151396  T

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Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 644724 - 645001
Alignment:
Q  15 atcacaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcgacaccttcacaaaatttaagtgacagt 114  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||| || | ||||||||||||||||||||||||||||    
T  644724 atcacagtacttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgacaccttcacaaaatttaagtgacagt 644823  T
Q  115 tgcaaaagcccgctgcaactctttgagacgatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaa 214  Q
    |||| |||||||||||||||||||||||   || |||| | |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  644824 tgcacaagcccgctgcaactctttgaga---tcaaataaa-tgatttatcgtaaactcttgtaaatgacaagtctaacacctccagtttgggaacttcaa 644919  T
Q  215 agttcaatgtacgtagcttcagtctt----agcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaac 292  Q
    ||||||||||| ||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  644920 agttcaatgtaagtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatgaac 645001  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 166 - 294
Target Start/End: Original strand, 553520 - 553652
Alignment:
Q  166 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtctt----agcgagttaaattcaaatgtc 261  Q
    |||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||| ||||    |||| ||||| ||||||||||    
T  553520 tcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcgggttaagttcaaatgtc 553619  T
Q  262 taatgttacaacatatcattaaaacatgaacaa 294  Q
    |||||||||||||| || |||||||||||||||    
T  553620 taatgttacaacatgtccttaaaacatgaacaa 553652  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 8184104 - 8184034
Alignment:
Q  150 atagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    |||||||| |||||| ||||||||||||  |||||||| ||||||||| ||||| ||||||||||||||||    
T  8184104 atagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttca 8184034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 12121660 - 12121601
Alignment:
Q  18 acaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcc 77  Q
    |||||| |||||||||| |||||| ||||||||||||||||| ||||||||| |||||||    
T  12121660 acaatatttcaaatcgatctctcttagttgtgtgcatttttctaccacatgcttcactcc 12121601  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 1600456 - 1600514
Alignment:
Q  162 atcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||||||| |||||| ||||||||| |||||||||||||||  |||||||||||||||    
T  1600456 atcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttca 1600514  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 1545814 - 1545883
Alignment:
Q  166 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttca 235  Q
    ||||||||||||||  |||||| ||||||||||||||| ||||||| |||||||| | ||| ||||||||    
T  1545814 tcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttcattttacatagcttca 1545883  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 570392 - 570448
Alignment:
Q  166 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaat 222  Q
    ||||||| |||| ||||||||| ||||||||| |||||| |||||||||||||||||    
T  570392 tcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaat 570448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 1513458 - 1513411
Alignment:
Q  173 ttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||||    
T  1513458 ttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttca 1513411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 8187154 - 8187095
Alignment:
Q  161 tatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    |||| ||||||||||||  |||||||| ||||||||||||||||| || |||||||||||    
T  8187154 tatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttca 8187095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 1519200 - 1519146
Alignment:
Q  166 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||| ||||||  |||||||| ||||||||| ||||||||||||||||||||||    
T  1519200 tcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttca 1519146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 220
Target Start/End: Complemental strand, 1548468 - 1548428
Alignment:
Q  180 tgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  1548468 tgacaagttcaacacctccagtttgggaatttcaaagttca 1548428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 90
Target Start/End: Original strand, 553384 - 553447
Alignment:
Q  27 caaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcctttgtctgcgaca 90  Q
    |||||||| |||||| ||||||||||| ||||| ||||||||  |||||||||| |||| ||||    
T  553384 caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcctttatctgtgaca 553447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 290
Target Start/End: Original strand, 566315 - 566358
Alignment:
Q  247 ttaaattcaaatgtctaatgttacaacatatcattaaaacatga 290  Q
    |||| ||||||||| ||||||||||||||||| |||||||||||    
T  566315 ttaagttcaaatgtgtaatgttacaacatatccttaaaacatga 566358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 1489412 - 1489365
Alignment:
Q  173 ttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||| ||||||||| |||||| || ||||||||||||||||||||||    
T  1489412 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 1489365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 1513607 - 1513548
Alignment:
Q  18 acaatacttcaaatcgacctctctcagttgtgtgcatttttcaaccacatgcgtcactcc 77  Q
    |||||| ||||||| || |||||||||||||||||||||||| | |||| || |||||||    
T  1513607 acaatatttcaaattgatctctctcagttgtgtgcatttttctagcacaagcttcactcc 1513548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 1537818 - 1537771
Alignment:
Q  173 ttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||| ||||||||| |||||| || ||||||||||||||||||||||    
T  1537818 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 1537771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 12121508 - 12121461
Alignment:
Q  173 ttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    ||||| ||||||||| |||||| || ||||||||||||||||||||||    
T  12121508 ttgtatatgacaagttcaacacttctagtttgggaacttcaaagttca 12121461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 218
Target Start/End: Complemental strand, 21834422 - 21834384
Alignment:
Q  180 tgacaagtccaacacctccagtttgggaacttcaaagtt 218  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  21834422 tgacaagtccaacacctccagcttgggaactacaaagtt 21834384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 1524597 - 1524490
Alignment:
Q  110 acagttgcaaaagcccgctgcaactctttgagacgatccaatagagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaac 209  Q
    |||||||||||||||| |  ||||||| |||||  ||   |||||||| |  ||| ||||| ||||||  |||||| | |||||||||||  ||||||||    
T  1524597 acagttgcaaaagcccacgacaactctgtgagatcat---atagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaac 1524501  T
Q  210 ttcaaagttca 220  Q
    |||||||||||    
T  1524500 ttcaaagttca 1524490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 53761844 - 53761776
Alignment:
Q  152 agagtgatatatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    |||||| | |||||| |||| | ||||||||||||| |||| |||| || ||||||||| |||||||||    
T  53761844 agagtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttca 53761776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 41901593 - 41901542
Alignment:
Q  166 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagt 217  Q
    |||||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  41901593 tcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 218
Target Start/End: Complemental strand, 38267614 - 38267562
Alignment:
Q  166 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagtt 218  Q
    ||||||||||||  || ||||||||||||||| || |||||||||||||||||    
T  38267614 tcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 41901506 - 41901462
Alignment:
Q  252 ttcaaatgtctaatgttacaacatatcattaaaacatgaacaata 296  Q
    ||||||||||||||||||||||| ||| ||||||| |||||||||    
T  41901506 ttcaaatgtctaatgttacaacacatccttaaaacttgaacaata 41901462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 41889612 - 41889488
Alignment:
Q  166 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtctt----agcgagttaaattcaaatgtc 261  Q
    |||||| ||||| |||| |||| ||||||||||| ||||||||||| |||||||| |  | ||||||||| | ||    | |  | ||| ||||||| ||    
T  41889612 tcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaaatatc 41889513  T
Q  262 taatgttacaacatatcattaaaac 286  Q
    ||||||||||||||||| |||||||    
T  41889512 taatgttacaacatatccttaaaac 41889488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Original strand, 32267603 - 32267636
Alignment:
Q  252 ttcaaatgtctaatgttacaacatatcattaaaa 285  Q
    ||||||||||||||||||||||||||| ||||||    
T  32267603 ttcaaatgtctaatgttacaacatatccttaaaa 32267636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 32267530 - 32267570
Alignment:
Q  180 tgacaagtccaacacctccagtttgggaacttcaaagttca 220  Q
    |||||||| ||| ||||||| ||||||||||||||||||||    
T  32267530 tgacaagttcaatacctccaatttgggaacttcaaagttca 32267570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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