View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2733_low_2 (Length: 613)

Name: NF2733_low_2
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2733_low_2
NF2733_low_2
[»] chr5 (10 HSPs)
chr5 (1-362)||(14744912-14745278)
chr5 (349-405)||(14741622-14741678)
chr5 (352-405)||(14283665-14283718)
chr5 (438-488)||(14741773-14741823)
chr5 (349-392)||(15010988-15011031)
chr5 (351-405)||(14290921-14290974)
chr5 (561-595)||(15053647-15053681)
chr5 (558-595)||(14290663-14290699)
chr5 (554-591)||(14741890-14741927)
chr5 (567-595)||(15010718-15010746)
[»] chr8 (1 HSPs)
chr8 (349-405)||(23875951-23876007)


Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 14744912 - 14745278
Alignment:
Q  1 ggcaacatgaacaatgagaaaggcaaacagtaacaacgcaacagagagaacgatgctnnnnnnntggcaagaatgacgaatataatgatagctggaatgc 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||        |||||||||||||||||||||||||||||||||||    
T  14744912 ggcaacatgaacaatgagaaaggcaaacagtaacaacacaacaaagagaacgatgctaaaaaaacggcaagaatgacgaatataatgatagctggaatgc 14745011  T
Q  101 acttgggcaaaaacaa-gatgagtggtaaggggagatgatcagaaacgacgacaa----gagttaaggtaaagatgagttaagaaggcattgagtgacca 195  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||||||||||||||||||||||    
T  14745012 acttgggcaaaaacaatgatgagtggtaaggggagatgatcagaaacgacgacaacaacgagtgaaggtaaagatgagttaagaaggcattgagtgacca 14745111  T
Q  196 agaagaagaataaagacgtaaggtttctttttggctgtgttttgagagagaataagtacagaggtttcatgacaaacatgttttgtattctaacggcgat 295  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14745112 agaagaagaataaagacgtaagggttctttttggctgtgttttgagagagaataagtacagagttttcatgacaaacatgttttgtattctaacggcgat 14745211  T
Q  296 ttgactgaatgtaactggaagggaggtatctgatgctttgcaaagcagaggggacatatgatgatat 362  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||    
T  14745212 ttgactgaatgtaactggaggggaggtatctgatgctttgcaaaacagaggggacatatgacgatat 14745278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 14741622 - 14741678
Alignment:
Q  349 acatatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc 405  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14741622 acatattatgatattttctcttcacttcccaatataaatacttacaagttttgaacc 14741678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 352 - 405
Target Start/End: Complemental strand, 14283718 - 14283665
Alignment:
Q  352 tatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc 405  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  14283718 tatgatgatattttctcttcacctcccaatataaatacttacaagttttgaacc 14283665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 438 - 488
Target Start/End: Original strand, 14741773 - 14741823
Alignment:
Q  438 caaaaatcatagcttcaaacgtatttattttcatctgtatatgtactgtat 488  Q
    ||||| |||||||||||||| |||||||||||||||||||||||| |||||    
T  14741773 caaaactcatagcttcaaacttatttattttcatctgtatatgtattgtat 14741823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 349 - 392
Target Start/End: Complemental strand, 15011031 - 15010988
Alignment:
Q  349 acatatgatgatattttctcttcacttcccaatataaatactta 392  Q
    |||||||| || ||||||||||||||||||||||||||||||||    
T  15011031 acatatgaagaaattttctcttcacttcccaatataaatactta 15010988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 351 - 405
Target Start/End: Complemental strand, 14290974 - 14290921
Alignment:
Q  351 atatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc 405  Q
    ||||||||||||||||||||||| ||  ||||||||||| |||||||||||||||    
T  14290974 atatgatgatattttctcttcacctctgaatataaatac-tacaagttttgaacc 14290921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 595
Target Start/End: Complemental strand, 15053681 - 15053647
Alignment:
Q  561 tatttcgttcaagattgataatcaactccagttag 595  Q
    ||||| |||||||||||||||||||||||||||||    
T  15053681 tattttgttcaagattgataatcaactccagttag 15053647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 595
Target Start/End: Complemental strand, 14290699 - 14290663
Alignment:
Q  558 agttatttcgttcaagattgataatcaactccagttag 595  Q
    |||||||| |||||||||||||||||||||||||||||    
T  14290699 agttattt-gttcaagattgataatcaactccagttag 14290663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 591
Target Start/End: Original strand, 14741890 - 14741927
Alignment:
Q  554 gttcagttatttcgttcaagattgataatcaactccag 591  Q
    |||||||||| | |||||||||||||||||||||||||    
T  14741890 gttcagttatattgttcaagattgataatcaactccag 14741927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 567 - 595
Target Start/End: Complemental strand, 15010746 - 15010718
Alignment:
Q  567 gttcaagattgataatcaactccagttag 595  Q
    |||||||||||||||||||||||||||||    
T  15010746 gttcaagattgataatcaactccagttag 15010718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 23876007 - 23875951
Alignment:
Q  349 acatatgatgatattttctcttcacttcccaatataaatacttacaagttttgaacc 405  Q
    ||||||||||||||||| |||| ||||||||||||||||||| |||| |||||||||    
T  23876007 acatatgatgatattttttctttacttcccaatataaatactcacaacttttgaacc 23875951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University