View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2733_low_21 (Length: 238)
Name: NF2733_low_21
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2733_low_21 |
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| [»] scaffold0419 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 28837953 - 28838172
Alignment:
| Q |
1 |
caaatttgtcagcaaagaaagaaaggttactttaaggaataagtgaagtgtttagtctgtgtaagtttaacatagtttataaggataatgtataatatat |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28837953 |
caaatttgtcat-aaagaaagaaaggttactttaaggaataagtgaagtgtttagtctgtgtaagtttaacatagtttataaggataatgtataatatat |
28838051 |
T |
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| Q |
101 |
ataaggactgagattaaaacctcagacacgcctcttatttaccttacatatgaatttcttgtcactaaattatttaaaataaataaattattcagtgttt |
200 |
Q |
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|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28838052 |
ataaggactgagattaaaacctcagacatgtctcttatttaccttacatatgaatttcttgtcactaaattatttaaaataaataaactattcagtgttt |
28838151 |
T |
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| Q |
201 |
atgtgaagattaattcatccc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
28838152 |
atgtgaagattaattcatccc |
28838172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4927 - 5138
Alignment:
| Q |
1 |
caaatttgtcagcaaagaaagaaaggttactttaaggaataagtgaagtgtttagtctgtgtaagtttaacatagtttataaggataatgtataatatat |
100 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| | | || || || || |
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| T |
4927 |
caaatttgtcaataaagaaagaaaggttactttaaggaataaatgaagtgtttagtctgtgtaagcttaacatagttgaaa--ga-aaggt------tac |
5017 |
T |
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| Q |
101 |
ataaggactgagattaaaacctcagacacgcctcttatttaccttacatatgaatttcttgtcactaaattatttaaaataaataaattattcagtgttt |
200 |
Q |
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| T |
5018 |
tttaagattgagattaaaatctcagacacgcctcttgtttaccttacatatgaatttcttgtcactaaattatttaaaataaataaattgttcagtgttt |
5117 |
T |
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| Q |
201 |
atgtgaagattaattcatccc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
5118 |
atgtgaagattaattcatccc |
5138 |
T |
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