View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2733_low_5 (Length: 475)
Name: NF2733_low_5
Description: NF2733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2733_low_5 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 24 - 365
Target Start/End: Complemental strand, 31333666 - 31333325
Alignment:
| Q |
24 |
ataaataaagatggtttacagagattttattgattttatatattcagaaaagtaactacaaagaaaagtatgcaacaaatatgcaaaacccatgctacca |
123 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31333666 |
ataaataaagatgttttacagagattttattgattttatatattcagaaaagtaactacaaagaaaagtatgcaacaaatatgcaaaacccatgctacca |
31333567 |
T |
|
| Q |
124 |
aagagaacttcaataaggaggacacaagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaacgcactccacaatcaatagctt |
223 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31333566 |
aagagaacttcaataagtaggacataagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaatgcactccacaatcaatagctt |
31333467 |
T |
|
| Q |
224 |
aataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaggaaaacaaaagtaatttctcatagaagtaaatctga |
323 |
Q |
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|
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31333466 |
aataacttattcatttgtcatgctcacataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatctga |
31333367 |
T |
|
| Q |
324 |
aaacaaaaaccattataaattcacaattcaaacttcatagca |
365 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
31333366 |
aaacaaaaaacattataaattcacaattcaaacttcatagca |
31333325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 24 - 365
Target Start/End: Complemental strand, 31340396 - 31340055
Alignment:
| Q |
24 |
ataaataaagatggtttacagagattttattgattttatatattcagaaaagtaactacaaagaaaagtatgcaacaaatatgcaaaacccatgctacca |
123 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31340396 |
ataaataaagatgttttacagagattttattgattttatatattcagaaaagtaactacaaagaaaagtatgcaacaaatatgcaaaacccatgctacca |
31340297 |
T |
|
| Q |
124 |
aagagaacttcaataaggaggacacaagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaacgcactccacaatcaatagctt |
223 |
Q |
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||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31340296 |
aagagaacttcaataagtaggacataagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaatgcactccacaatcaatagctt |
31340197 |
T |
|
| Q |
224 |
aataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaggaaaacaaaagtaatttctcatagaagtaaatctga |
323 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31340196 |
aataacttattcatttgtcatgcacacataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatctga |
31340097 |
T |
|
| Q |
324 |
aaacaaaaaccattataaattcacaattcaaacttcatagca |
365 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
31340096 |
aaacaaaaaacattataaattcacaattcaaacttcatagca |
31340055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 45245572 - 45245523
Alignment:
| Q |
43 |
agagattttattgattttatatattcagaaaagtaactacaaagaaaagt |
92 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || |||||||| |
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| T |
45245572 |
agagattctattgattttatatattcagaaaagtaacagcagagaaaagt |
45245523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 189 - 475
Target Start/End: Original strand, 1656879 - 1657165
Alignment:
| Q |
189 |
acaagcaatgcaacgcactccacaatcaatagcttaataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaagg |
288 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
1656879 |
acaagcaatgcaatgcactccacaatcaatagcttaataacttattcatttgtcatgcgcacataacatgatgagcatatatacaattacgttcagaaag |
1656978 |
T |
|
| Q |
289 |
aaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgata |
388 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1656979 |
aaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgata |
1657078 |
T |
|
| Q |
389 |
agagtctccactctttgagattaaaaacgataccgagctgcgaggcaacgacttattagcacctcatcacaatacttcaaatcgacc |
475 |
Q |
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||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1657079 |
agagtctccgctctttgagattaaaaacgatatcgagctgcgaggcaacgacttattagcacctcatcacagtacttcaaatcgacc |
1657165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 104 - 444
Target Start/End: Original strand, 644374 - 644725
Alignment:
| Q |
104 |
atgcaaaacccatgctaccaaagagaacttcaataaggaggacacaagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaacg |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
644374 |
atgcaaaacccatgctaccaaagagaacttaaataagtaggaaacaagaatttgttcaagtaatataagtcatggcaaagcgacaacaagcaatgcaatg |
644473 |
T |
|
| Q |
204 |
cactccacaatcaatagctt------------aataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaggaaa |
291 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | || || | |
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| T |
644474 |
cactccacaatcaatagcttgcattatatattaataacttattcatttgtcatgcacacataacatgatgagcatatatacaattacgttaaaaaagaga |
644573 |
T |
|
| Q |
292 |
acaaaagtaatttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataaga |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
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| T |
644574 |
acaaaagtaatttctcatagaagtaaatctgaaaaccaaaaacattagaaattcacaattcaaacttcatagcaaacaagacatccttgccgtgataaga |
644673 |
T |
|
| Q |
392 |
gtctccactctttgagattaaaaacgataccgagctgcgaggcaacgacttat |
444 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||| ||| |||||||||||||| |
|
|
| T |
644674 |
gtctccgctctttgagatt-aaaacgataccgagttgctaggcaacgacttat |
644725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 644267 - 644356
Alignment:
| Q |
24 |
ataaataaagatggtttacagagattttattgattttatatattcagaaaagtaactacaaagaaaagtatgcaacaaatatgcaaaacc |
113 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |
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|
| T |
644267 |
ataaataaagattttttacagagattttattgattttatatattcagaaaagtaactataaggaaaagtatgctacaaatatgcaaaacc |
644356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 329
Target Start/End: Original strand, 546594 - 546622
Alignment:
| Q |
301 |
atttctcatagaagtaaatctgaaaacaa |
329 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
546594 |
atttctcatagaagtaaatctgaaaacaa |
546622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 299 - 475
Target Start/End: Complemental strand, 28246654 - 28246478
Alignment:
| Q |
299 |
taatttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctcca |
398 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
28246654 |
taatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagcaaacaagacatccttgatgtgataagagtctccg |
28246555 |
T |
|
| Q |
399 |
ctctttgagattaaaaacgataccgagctgcgaggcaacgacttattagcacctcatcacaatacttcaaatcgacc |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |
|
|
| T |
28246554 |
ctctttgagattaaaaacgataccgagctgcgaggcaacgacttattagcaccttatcacagtacttcaaattgacc |
28246478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 336 - 475
Target Start/End: Complemental strand, 11936599 - 11936460
Alignment:
| Q |
336 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccactctttgagattaaaaacgataccgagctgcgaggca |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11936599 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccgctctttgagattaaaaacgataccgagctgcgaggca |
11936500 |
T |
|
| Q |
436 |
acgacttattagcacctcatcacaatacttcaaatcgacc |
475 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
11936499 |
acgacttattagcaccttatcacagtacttcaaatcgacc |
11936460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 336 - 475
Target Start/End: Complemental strand, 11948579 - 11948440
Alignment:
| Q |
336 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccactctttgagattaaaaacgataccgagctgcgaggca |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
11948579 |
ttataaattcacaattcaaacttcatagcaaacaagacatccttgacgtgataagagtctccgctctttgagattaaaaacgataccgagctgcgaggca |
11948480 |
T |
|
| Q |
436 |
acgacttattagcacctcatcacaatacttcaaatcgacc |
475 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
11948479 |
acgacttattagcaccttatcacagtacttcaaatcgacc |
11948440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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